PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021310t3

Common Name

TCM_021310

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 758aa MW: 86455.3 Da PI: 6.4421

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021310t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.1	1.9e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k++r+r+++r+gC a++++ k+ +w+vt +++ HnHel Thecc1EG021310t3 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKLSEDGKTQRNRKSSRCGCLASMRIVKRAdfdVPEWRVTGFSNVHNHEL 151 6*************9998874556679***************9***************98887676789***********9 PP FAR1 90 a 90 Thecc1EG021310t3 152 L 152 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-22	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.582	555	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.5E-7	561	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.4E-6	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MSEGTSMVME SSENGTDLSQ DDTGTIVEMP EDTILSQQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QMKLSEDGKT QRNRKSSRCG 120 CLASMRIVKR ADFDVPEWRV TGFSNVHNHE LLKANEVRLL PAYCTITPDD KARICMFAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVN RDYDAIDLIA MCKKLKDENP 240 HFQYDFKLDG HNRLEHIAWS YASSVQLYET FGDAVVFDTT HRMDSYDMLL GIWVGVDNYG 300 MTSFFGCVLL RDENMQSFSW ALKTFLGFMK GKAPQTLLTD QNMWLKEAIA IEMPETKHAF 360 CIWHIISKFS DWFSFLLGSR YDDWKSDFYQ LYTLELVEDF EEEWRDMVDK NGLHENKHII 420 SLYALRTFWA LPFLRPYFFA GLTSSCQSET INAFIQRILS AQSQQDRFVE QVVAEIVEFN 480 DRAGSKQKMQ RKLQKVCLKT GSPIESHAAT VLTPYAFGKL QEELLLAPQY ASFLVDEGCF 540 HVKHHSQMDG GCKVLWVPCE EHISCSCHHF EFSGILCRHV LRVLSSNNCF HIPEQYLPNR 600 WRINSSSSTN LLRNATREHS EKIQLLESMA STLIAESIET EERLDVACDQ TAMVLSRIKD 660 LPRPTHSAND IVYNCPSDLI LPEVEDTDGI VQSFTIGTSH ESLTSGKMKD RRSREGIDIA 720 RKRRHFSGSC CGQFGHDSSD CPMLGGDNLN GDALGYL*

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MSEGTSMVME SSENGTDLSQ DDTGTIVEMP EDTILSQQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QMKLSEDGKT QRNRKSSRCG  120
CLASMRIVKR ADFDVPEWRV TGFSNVHNHE LLKANEVRLL PAYCTITPDD KARICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVN RDYDAIDLIA MCKKLKDENP  240
HFQYDFKLDG HNRLEHIAWS YASSVQLYET FGDAVVFDTT HRMDSYDMLL GIWVGVDNYG  300
MTSFFGCVLL RDENMQSFSW ALKTFLGFMK GKAPQTLLTD QNMWLKEAIA IEMPETKHAF  360
CIWHIISKFS DWFSFLLGSR YDDWKSDFYQ LYTLELVEDF EEEWRDMVDK NGLHENKHII  420
SLYALRTFWA LPFLRPYFFA GLTSSCQSET INAFIQRILS AQSQQDRFVE QVVAEIVEFN  480
DRAGSKQKMQ RKLQKVCLKT GSPIESHAAT VLTPYAFGKL QEELLLAPQY ASFLVDEGCF  540
HVKHHSQMDG GCKVLWVPCE EHISCSCHHF EFSGILCRHV LRVLSSNNCF HIPEQYLPNR  600
WRINSSSSTN LLRNATREHS EKIQLLESMA STLIAESIET EERLDVACDQ TAMVLSRIKD  660
LPRPTHSAND IVYNCPSDLI LPEVEDTDGI VQSFTIGTSH ESLTSGKMKD RRSREGIDIA  720
RKRRHFSGSC CGQFGHDSSD CPMLGGDNLN GDALGYL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007035727.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Refseq	XP_017975958.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Refseq	XP_017975959.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A061EWP7	0.0	A0A061EWP7_THECC; Far1-related sequence 11 isoform 3
STRING	EOY06654	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Thecc1EG021310t3
Entrez Gene	18603597

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]