PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021065t3

Common Name

TCM_021065

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 758aa MW: 87514.4 Da PI: 8.6598

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021065t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.9	5.3e-21	43	118	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA +vGF++r+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw +++++++HnHel Thecc1EG021065t3 43 EFYGQYAIRVGFKIRTGQLYRSRTDGSVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDSGKWLIDQIQKDHNHELG 118 6*************************************876..............589**************************95 PP
2	FAR1	64.4	3.1e-20	198	271	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YA+ +GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++k++++g+w v++l+++HnH+l Thecc1EG021065t3 198 YYQAYAEGAGFRVRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAYMRIKRKDSGTWIVDRLHKDHNHDL 271 8************************************999..............4899************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.4E-17	43	118	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.9E-16	198	271	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-29	371	464	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.151	634	682	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.8E-6	657	684	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.2E-6	658	678	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MFVKAYPVGM VHMLNNGNVE DEGESRMEPY VGLEFDSADE AREFYGQYAI RVGFKIRTGQ 60 LYRSRTDGSV SSRRFVCSKE GFQLNSRTGC PAFIRVQRRD SGKWLIDQIQ KDHNHELGPV 120 GESHSPILQQ TPPVVTKSLV EVLRRPKVKL LEEIDNGGLI PSGIINFKRH KRGGDGGQSI 180 AEPYTGLEFN SANEAYGYYQ AYAEGAGFRV RIGQLFRSKN DGSITSRRFV CSKEGFQHPS 240 RVGCGAYMRI KRKDSGTWIV DRLHKDHNHD LEVHAVYQRK FSTASKKLLE EEAGGLASMD 300 LVEVNNGKLV KRRQENKIGA EWYSVLFEYF QTRQAEDTGF FYSVDVDNGS CMSVFWADGR 360 SRFSCSQFGD VIVFDASYRK NNYVVPFATF VGVNHHKQPV LLGSALIANE SKESFTWLFQ 420 TWFRAMSRCH PKSIIADQDM AIQQAIAKVF PGTHHRFSLW QIRAKERENF RSMPNEFRYE 480 YEKCVYQSQT TVEFNTTWNL LITKYCLREN IWLKHMYEKR ESWVPLYLRG KFFAGIPIGE 540 SVESLFGTQV NGQTPLREFI SRYEQGLEQS REEERKEDFN SFNLQAYLQT KEPVEEQCRR 600 LYTFTIFKIF QDELLQSYSY IGIKTYEEGA ISRYVVRRSG NENDKHAVTF SAVNLSVNCS 660 CQMFEFIGVL CRHVLKVFKL LDMRELPPQY ILYRWMRNPE YRILCGAESG ISSQELKAFM 720 VWSLRETACK YVECGAASVE KYKLAHEIMR EGGKRLC*

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MFVKAYPVGM VHMLNNGNVE DEGESRMEPY VGLEFDSADE AREFYGQYAI RVGFKIRTGQ  60
LYRSRTDGSV SSRRFVCSKE GFQLNSRTGC PAFIRVQRRD SGKWLIDQIQ KDHNHELGPV  120
GESHSPILQQ TPPVVTKSLV EVLRRPKVKL LEEIDNGGLI PSGIINFKRH KRGGDGGQSI  180
AEPYTGLEFN SANEAYGYYQ AYAEGAGFRV RIGQLFRSKN DGSITSRRFV CSKEGFQHPS  240
RVGCGAYMRI KRKDSGTWIV DRLHKDHNHD LEVHAVYQRK FSTASKKLLE EEAGGLASMD  300
LVEVNNGKLV KRRQENKIGA EWYSVLFEYF QTRQAEDTGF FYSVDVDNGS CMSVFWADGR  360
SRFSCSQFGD VIVFDASYRK NNYVVPFATF VGVNHHKQPV LLGSALIANE SKESFTWLFQ  420
TWFRAMSRCH PKSIIADQDM AIQQAIAKVF PGTHHRFSLW QIRAKERENF RSMPNEFRYE  480
YEKCVYQSQT TVEFNTTWNL LITKYCLREN IWLKHMYEKR ESWVPLYLRG KFFAGIPIGE  540
SVESLFGTQV NGQTPLREFI SRYEQGLEQS REEERKEDFN SFNLQAYLQT KEPVEEQCRR  600
LYTFTIFKIF QDELLQSYSY IGIKTYEEGA ISRYVVRRSG NENDKHAVTF SAVNLSVNCS  660
CQMFEFIGVL CRHVLKVFKL LDMRELPPQY ILYRWMRNPE YRILCGAESG ISSQELKAFM  720
VWSLRETACK YVECGAASVE KYKLAHEIMR EGGKRLC*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007035352.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7 isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A061ENQ5	0.0	A0A061ENQ5_THECC; FAR1-related sequence 7 isoform 1
STRING	EOY06278	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Thecc1EG021065t3
Entrez Gene	18603370

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]