PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021065t1

Common Name

TCM_021065

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 786aa MW: 90387.4 Da PI: 8.4022

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021065t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.8	5.6e-21	71	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA +vGF++r+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw +++++++HnHel Thecc1EG021065t1 71 EFYGQYAIRVGFKIRTGQLYRSRTDGSVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDSGKWLIDQIQKDHNHELG 146 6*************************************876..............589**************************95 PP
2	FAR1	64.4	3.2e-20	226	299	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YA+ +GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++k++++g+w v++l+++HnH+l Thecc1EG021065t1 226 YYQAYAEGAGFRVRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAYMRIKRKDSGTWIVDRLHKDHNHDL 299 8************************************999..............4899************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-17	71	146	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.2E-16	226	299	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-29	399	492	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.151	662	710	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.8E-6	685	712	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.3E-6	686	706	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MGIDSGSSHF TDFKSSDINA NSGECVNAMF VKAYPVGMVH MLNNGNVEDE GESRMEPYVG 60 LEFDSADEAR EFYGQYAIRV GFKIRTGQLY RSRTDGSVSS RRFVCSKEGF QLNSRTGCPA 120 FIRVQRRDSG KWLIDQIQKD HNHELGPVGE SHSPILQQTP PVVTKSLVEV LRRPKVKLLE 180 EIDNGGLIPS GIINFKRHKR GGDGGQSIAE PYTGLEFNSA NEAYGYYQAY AEGAGFRVRI 240 GQLFRSKNDG SITSRRFVCS KEGFQHPSRV GCGAYMRIKR KDSGTWIVDR LHKDHNHDLE 300 VHAVYQRKFS TASKKLLEEE AGGLASMDLV EVNNGKLVKR RQENKIGAEW YSVLFEYFQT 360 RQAEDTGFFY SVDVDNGSCM SVFWADGRSR FSCSQFGDVI VFDASYRKNN YVVPFATFVG 420 VNHHKQPVLL GSALIANESK ESFTWLFQTW FRAMSRCHPK SIIADQDMAI QQAIAKVFPG 480 THHRFSLWQI RAKERENFRS MPNEFRYEYE KCVYQSQTTV EFNTTWNLLI TKYCLRENIW 540 LKHMYEKRES WVPLYLRGKF FAGIPIGESV ESLFGTQVNG QTPLREFISR YEQGLEQSRE 600 EERKEDFNSF NLQAYLQTKE PVEEQCRRLY TFTIFKIFQD ELLQSYSYIG IKTYEEGAIS 660 RYVVRRSGNE NDKHAVTFSA VNLSVNCSCQ MFEFIGVLCR HVLKVFKLLD MRELPPQYIL 720 YRWMRNPEYR ILCGAESGIS SQELKAFMVW SLRETACKYV ECGAASVEKY KLAHEIMREG 780 GKRLC*

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MGIDSGSSHF TDFKSSDINA NSGECVNAMF VKAYPVGMVH MLNNGNVEDE GESRMEPYVG  60
LEFDSADEAR EFYGQYAIRV GFKIRTGQLY RSRTDGSVSS RRFVCSKEGF QLNSRTGCPA  120
FIRVQRRDSG KWLIDQIQKD HNHELGPVGE SHSPILQQTP PVVTKSLVEV LRRPKVKLLE  180
EIDNGGLIPS GIINFKRHKR GGDGGQSIAE PYTGLEFNSA NEAYGYYQAY AEGAGFRVRI  240
GQLFRSKNDG SITSRRFVCS KEGFQHPSRV GCGAYMRIKR KDSGTWIVDR LHKDHNHDLE  300
VHAVYQRKFS TASKKLLEEE AGGLASMDLV EVNNGKLVKR RQENKIGAEW YSVLFEYFQT  360
RQAEDTGFFY SVDVDNGSCM SVFWADGRSR FSCSQFGDVI VFDASYRKNN YVVPFATFVG  420
VNHHKQPVLL GSALIANESK ESFTWLFQTW FRAMSRCHPK SIIADQDMAI QQAIAKVFPG  480
THHRFSLWQI RAKERENFRS MPNEFRYEYE KCVYQSQTTV EFNTTWNLLI TKYCLRENIW  540
LKHMYEKRES WVPLYLRGKF FAGIPIGESV ESLFGTQVNG QTPLREFISR YEQGLEQSRE  600
EERKEDFNSF NLQAYLQTKE PVEEQCRRLY TFTIFKIFQD ELLQSYSYIG IKTYEEGAIS  660
RYVVRRSGNE NDKHAVTFSA VNLSVNCSCQ MFEFIGVLCR HVLKVFKLLD MRELPPQYIL  720
YRWMRNPEYR ILCGAESGIS SQELKAFMVW SLRETACKYV ECGAASVEKY KLAHEIMREG  780
GKRLC*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007035352.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7 isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A061ENQ5	0.0	A0A061ENQ5_THECC; FAR1-related sequence 7 isoform 1
STRING	EOY06278	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Thecc1EG021065t1
Entrez Gene	18603370

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]