PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021037t1
Common NameTCM_021037
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 294aa    MW: 33986.4 Da    PI: 9.0694
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021037t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.4e-194996148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd ll+++v+ +G g+W+++ar  g++R +k+c++rw +yl
  Thecc1EG021037t1 49 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 96
                      79********************************************97 PP
2Myb_DNA-binding51.62.2e-16102146147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Thecc1EG021037t1 102 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 146
                       7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.81644100IPR017930Myb domain
SuperFamilySSF466891.83E-3046143IPR009057Homeodomain-like
SMARTSM007171.1E-164898IPR001005SANT/Myb domain
PfamPF002492.5E-174996IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2450103IPR009057Homeodomain-like
CDDcd001673.36E-125196No hitNo description
PROSITE profilePS5129419.35101151IPR017930Myb domain
SMARTSM007171.4E-14101149IPR001005SANT/Myb domain
PfamPF002491.3E-13102146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-24104150IPR009057Homeodomain-like
CDDcd001673.76E-10106147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGHLTDDDGI LKRSAVYLNT EKMGMILKMT DGVMAGHLGW GIIEEGWRKG PWTAEEDRLL  60
IEYVRVHGEG RWNSVARLAG LKRNGKSCRL RWVNYLRPDL KRGQITPHEE SIILELHARW  120
GNRWSTIARS LPGRTDNEIK NYWRTHFKKK AKLSPDNSDK AKARLLKRQQ FQQQQLLQQQ  180
EQQQQQQQQQ QQQQQLQLNQ FDMKRIMSLL DENEHRAPYV PQLRQEMATS YPNTTEEQGF  240
FYPMINGNVS GSDTSNEEIL WDGLWNLDDV HGTFGSACAT SKASLHNLVA PFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-27231511128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974784.10.0PREDICTED: protein ODORANT1
TrEMBLA0A061EPG80.0A0A061EPG8_THECC; Myb domain protein 79 isoform 1
STRINGEOY062370.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.19e-92myb domain protein 305
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]