PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020321t1
Common NameTCM_020321
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 439aa    MW: 48298.9 Da    PI: 7.4661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020321t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.3e-20272321356
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  Thecc1EG020321t1 272 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAMAYDTAAYILRGE 321
                       8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.51E-32270330No hitNo description
PROSITE profilePS5103222.497271328IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22271329IPR016177DNA-binding domain
SMARTSM003805.8E-36271334IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31271329IPR001471AP2/ERF domain
PfamPF008475.8E-13272321IPR001471AP2/ERF domain
PRINTSPR003677.2E-11272283IPR001471AP2/ERF domain
PRINTSPR003677.2E-11294310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MSKENQFPKT ETFMNKEWPS YIYGMATGPK FFNDPIMWGA LSGTACHKNG SGIGSKLSSS  60
SSSSPSPDRL LSSSNSSSSA EEAPGANLLK NIPGFIRQDV VHEHQSSLFV SGFSSVHPPG  120
DSVSDIKDGF IPVNFLESFP EVHHAQVSEP PSPSSLSTTS KFPNLTLFLP EPTMIDPSTR  180
AIVSIGKKSE PTSNLSQDPT YHTPQLGQIQ SQPGNEWLRI NQSLTNYPSK GFSDYWLSTT  240
KTQPMKYTGR RLHNQHQKGS SVSSASSTGK LFRGVRQRHW GKWVAEIRLP RNRTRVWLGT  300
FDTAEEAAMA YDTAAYILRG EYAHLNFPDL KHQLKANSLN GNTAALLEAK LQAISQGLSA  360
NKKSNDPSPT QEKVKDLNEN TAKREWQFEV ESKAGSEVNE SNKKSQEMLP SDVDAVQLSR  420
MPSLDMDMIW DALLVSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-20267338168ATERF1
3gcc_A9e-20267338168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974357.10.0PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBLA0A061EJU10.0A0A061EJU1_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOY052850.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.15e-69ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]