PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG020251t1

Common Name

TCM_020251

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 693aa MW: 79985.9 Da PI: 6.4678

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG020251t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77	3.6e-24	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w+v+++++ HnHel Thecc1EG020251t1 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvegVTQWYVSQFSNVHNHELL 162 69******************8888.**************************************998767789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-22	71	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-24	294	387	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.977	565	601	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.4E-9	571	600	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.9E-4	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MTMKPSNNIW IRCQQCPCGD WKCYVKYEGD DQTSVSSQLI KNETTSASAS SEAVFTPYVG 60 QIFKSDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVEGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK 240 RENDTLELLE ACKAMSVRDA NFVYDYTTDE NNKVENIAWS YGDSVHAYTV FGDVITFDTT 300 YRSITYGLLL GVWFGIDNHG KPIFFGCVLL QDESSNSFTW ALQTFLHFMR GRHPQTILTD 360 LDSSLRDAIA RELPNTKHVI CLWHVLSKLS SWFSLPLGSQ YVEFKAEFDT LCHSVGIEEF 420 EHQWNLLVAR FGLASDKHIA LLFSYRTSWL LSYIRGYFLA RSMTADFSQS LDAFLKRILS 480 GQTCLQSFFE QVGVAADLRN QSREGMQYMH IKTCLPIEEN ARSILTPYAF NALQHEIVLS 540 MQYATTEMGN GSYLVQHYKK MDGEYLVIWI PQEEQIHCSC KEFEHSGILC RHCLRVLIVK 600 NYFEIPEKYV LFRWRLESSL VPVEDQNAQW SSDECVQAFH SLAATLLTES LFTKERFNHV 660 HRELTRLLDY VKDMPVCNEF ALNMAANNIS ES*

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MTMKPSNNIW IRCQQCPCGD WKCYVKYEGD DQTSVSSQLI KNETTSASAS SEAVFTPYVG  60
QIFKSDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVEGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK  240
RENDTLELLE ACKAMSVRDA NFVYDYTTDE NNKVENIAWS YGDSVHAYTV FGDVITFDTT  300
YRSITYGLLL GVWFGIDNHG KPIFFGCVLL QDESSNSFTW ALQTFLHFMR GRHPQTILTD  360
LDSSLRDAIA RELPNTKHVI CLWHVLSKLS SWFSLPLGSQ YVEFKAEFDT LCHSVGIEEF  420
EHQWNLLVAR FGLASDKHIA LLFSYRTSWL LSYIRGYFLA RSMTADFSQS LDAFLKRILS  480
GQTCLQSFFE QVGVAADLRN QSREGMQYMH IKTCLPIEEN ARSILTPYAF NALQHEIVLS  540
MQYATTEMGN GSYLVQHYKK MDGEYLVIWI PQEEQIHCSC KEFEHSGILC RHCLRVLIVK  600
NYFEIPEKYV LFRWRLESSL VPVEDQNAQW SSDECVQAFH SLAATLLTES LFTKERFNHV  660
HRELTRLLDY VKDMPVCNEF ALNMAANNIS ES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007034252.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_007034253.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A061EKM9	0.0	A0A061EKM9_THECC; FAR1-related sequence 10 isoform 1
STRING	EOY05178	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Thecc1EG020251t1
Entrez Gene	18602662

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]