PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG020038t1

Common Name

TCM_020038

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 315aa MW: 35822 Da PI: 8.1143

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG020038t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.2	2.1e-26	77	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAk++GF++r+++ ++s +n i+ r+fvCs+eg+r+ ++++++ r +r+ tr gCka++++ ++ gkw vtk++ eHnH+l+ Thecc1EG020038t1 77 DFYFEYAKRTGFTIRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHTHRK-DRVlpPRPITREGCKAMIRLAARDGGKWIVTKFVREHNHKLM 167 6***************************************9998822.222459********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-24	77	167	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MAGAADPHDF SDSDRSSEDE TAVNTAEYEG MGPELLQGHN VMNNEFIALE QSGKALDIGN 60 LEPYNGMTFQ SLDDARDFYF EYAKRTGFTI RTNRIRHSLK NMAIIGRDFV CSREGFRAAK 120 HTHRKDRVLP PRPITREGCK AMIRLAARDG GKWIVTKFVR EHNHKLMTLC KFPGELPTIN 180 MLSEAFAHTL LTLIAVVSAI AYSSLWVGIV EKTLLSKIWV SGTFVVAPGL RYLMLRHARK 240 EYNSLFGKTK QNQEEKDKKI QDLTSELQRE KERSAAFRQQ LQKILKDLEE HAEFMSIRVE 300 DIVDSLKKVE LDDV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007033949.1	1e-139	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_017974711.1	1e-139	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A061ERC6	0.0	A0A061ERC6_THECC; Far-red impaired responsive family protein isoform 1
STRING	EOY04874	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16776	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-27	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG020038t1
Entrez Gene	18602485

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]