PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG020020t1

Common Name

TCM_020020

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 328aa MW: 37366.6 Da PI: 7.7399

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG020020t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.5	2.2e-28	83	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+ +eH+H+l+p Thecc1EG020020t1 83 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFMKEHTHPLTP 170 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-25	83	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MVEFGVHGDV NGGMVLNSVQ VEAGSMDNEN EAVESPVEET FQQGVNEKMD RTSPERDDIP 60 EGIPADEPYV GQEFESEAAA HAFYNAYATR VGFIIRVSKL SRSRRDGSAI GRALVCNKEG 120 FRMPDKREKI VRQRAETRVG CRAMILVRKV SSGKWVVTKF MKEHTHPLTP GKGRRDCIYD 180 QYPRVEVDYL RIASLYHPVR SWVHGFSLSK GKPVLMCHIS WNLFIAIDTC CLEPIISRNI 240 LTGRVIMCNC GYLSPFSSCY CFNNEHNKIR ELTQQLANEK KRAATYKRHL ELIFEQIEEH 300 NESLSKKIQH IVDSVREMDN KEQLSHV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974709.1	1e-133	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_017974710.1	1e-133	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A061EKD1	0.0	A0A061EKD1_THECC; Far-red impaired responsive family protein
STRING	EOY04852	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-61	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG020020t1
Entrez Gene	18602471

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]