PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019937t1
Common NameTCM_019937
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 436aa    MW: 49399.6 Da    PI: 4.7488
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019937t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.53.2e-2461613128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikev..diykvePwdLp.kkvka.eekewyfFskrdkkyatgk............rknrat 78 
                       +Gf F+P+deel+  +L++++ +     + + i+++  di+k+ePwdLp   +k  +++ wyfF +   k++++k              nrat
  Thecc1EG019937t1   6 KGFGFRPSDEELI-GHLRNRILSGGgYFV-QDITDLgiDICKWEPWDLPgLIMKIsSDSVWYFFYPVTYKNPKSKpkmmnkvndkrkPINRAT 96 
                       7************.566666666652444.55776556***********54333326789*****999999944434444444433245788* PP

               NAM  79 ksgyWkatgkdkevlsk.kgelvglkktLvfy..............kgrapkgektdWvmheyrl 128
                       k+g Wk +g+  +v ++ +++++g+k+ L f+              k +++  +kt W++ ey+l
  Thecc1EG019937t1  97 KEGKWKPSGNPVKVRARdSNKQIGIKRHLYFFisevnkkndnrskvKTTNSYHKKTPWILYEYEL 161
                       **************99977889**********9999887776665445555667*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.8254180IPR003441NAC domain
SuperFamilySSF1019416.54E-275180IPR003441NAC domain
PfamPF023651.9E-136161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MNNSSKGFGF RPSDEELIGH LRNRILSGGG YFVQDITDLG IDICKWEPWD LPGLIMKISS  60
DSVWYFFYPV TYKNPKSKPK MMNKVNDKRK PINRATKEGK WKPSGNPVKV RARDSNKQIG  120
IKRHLYFFIS EVNKKNDNRS KVKTTNSYHK KTPWILYEYE LTDVHPSLQN EFFLGKLMKQ  180
SESTNISSSK GETSQQLPSN SLGNPIPTPE VQLVFDEPLV EMEVSNGYDW IQNQSSVSEQ  240
VPVDNPEERC NRANFVNDVN DYEVSNIPST FENYVAEDAI PQNLQVDYPE ERSNQHNVIA  300
ENEGLDLSYN FSSHPIPDNL FDFDSSYWDG IYLDELFGAL EAPNNHDGVQ NQSSTNQQDA  360
DEFRNSNFIN NEIASPDETS KAAAAEIGSN LPSLGMTESS YPMESFRKRS CREHEGSSAD  420
IETEVAPAQA KKSRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033827.20.0PREDICTED: NAC domain-containing protein 62
TrEMBLA0A061EJE90.0A0A061EJE9_THECC; Nam protein 1, putative
STRINGEOY047530.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.28e-23TCV-interacting protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]