PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019165t1
Common NameTCM_019165
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRAS
Protein Properties Length: 656aa    MW: 71951.4 Da    PI: 5.1236
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019165t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.78e-1272365741350
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       lv++L++cAeav++++l+la+al++++  la++++ +m+++a+yf+eALa+r++r    +y    p+++ + + ++ l++   f+e++P+lkf
  Thecc1EG019165t1 236 LVHTLMACAEAVQQDNLKLADALVKHIGLLAASQAGAMRKVATYFAEALARRIYR----IY----PQDSLDPSYTDILQM--HFYETCPYLKF 318
                       689****************************************************....44....444433234444433..5********** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                       +h+taNqaIlea+++++ vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +va++l
  Thecc1EG019165t1 319 AHFTANQAILEAFATANSVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNSDALQQVGWKLAQLANTIGVEFEFRGFVATSL 411
                       ********************************************************************************************* PP

              GRAS 187 edleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       +dle+e+L+++p   Ea+aVn+v++lhrll++++ +e+    vL+ +k ++Pk+++vveqea+hn++ Fl+rf+eal+yys+lfdsle +   
  Thecc1EG019165t1 412 ADLEPEMLEIRPpeVEAVAVNSVFELHRLLARPGGIEK----VLSSIKAMKPKILTVVEQEANHNGPFFLDRFTEALHYYSSLFDSLEGSGVG 500
                       ************9999*********************9....*********************************************766555 PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                         +++ ++++ +lgr+i+nvvaceg +r+erhetl +Wr r+e+aGF+pv+l+++a+kqa++ll+ ++ +dgyr
  Thecc1EG019165t1 501 PPSQDLVMSELYLGRQICNVVACEGMDRIERHETLTQWRTRMETAGFSPVHLGSNAYKQASMLLALFAgGDGYR 574
                       567889999999********************************************************9***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.7E-3846119No hitNo description
PfamPF120412.7E-3646112IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098568.326210577IPR005202Transcription factor GRAS
PfamPF035142.8E-124236574IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MKRERQEICG ATSYGSGSGS KSESSTIGNP NKEKLWEEEQ EAGGMDELLA VLGYKVRYSD  60
MADVAQKLEQ LEMVMGTAQE DGISHLSCDT IHYNPSDLSG WVQSMLTELN NPAAVNLDPV  120
LANSDSNSSI LGQINQDPSK PQRQQQLVSS NQSQVYNDDS EYDLRAIPGV AANPPPKSES  180
DSESTRKRMK TSVGLSGSTG YGSSSSSPQG IGVSGAVTES TRPVVLIDSQ ETGVRLVHTL  240
MACAEAVQQD NLKLADALVK HIGLLAASQA GAMRKVATYF AEALARRIYR IYPQDSLDPS  300
YTDILQMHFY ETCPYLKFAH FTANQAILEA FATANSVHVI DFGLKQGMQW PALMQALALR  360
PGGPPAFRLT GIGPPQPDNS DALQQVGWKL AQLANTIGVE FEFRGFVATS LADLEPEMLE  420
IRPPEVEAVA VNSVFELHRL LARPGGIEKV LSSIKAMKPK ILTVVEQEAN HNGPFFLDRF  480
TEALHYYSSL FDSLEGSGVG PPSQDLVMSE LYLGRQICNV VACEGMDRIE RHETLTQWRT  540
RMETAGFSPV HLGSNAYKQA SMLLALFAGG DGYRGRFFLM GAFVTFKVGS NDKAYLFCPF  600
EFFLCVLDFL NKWVWHDSHR ERVMLVWHSV QIAPSPSGLQ NLDSFGDVFE KKMKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6223159614373Protein SCARECROW
5b3h_A2e-6223159613372Protein SCARECROW
5b3h_D2e-6223159613372Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017975440.10.0PREDICTED: DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A061EGD90.0A0A061EGD9_THECC; GRAS family transcription factor family protein
STRINGEOY039510.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0RGA-like 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]