PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG018621t1

Common Name

TCM_018621

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 343aa MW: 38745.9 Da PI: 7.4019

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG018621t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.4	2.3e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL +kv ++ + + +i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke++ Thecc1EG018621t1 16 LPPGFRFHPTDEELITHYLSQKVLNSCFCA-IAIGEVDLNKCEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIF 107 79*********************99888.78***********888999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++lvg+kktLvfy+grapkgekt+Wvmheyrle Thecc1EG018621t1 108 K-AKTLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 142 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-63	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.846	16	166	IPR003441	NAC domain
Pfam	PF02365	2.2E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MENISSFRKE DEQMELPPGF RFHPTDEELI THYLSQKVLN SCFCAIAIGE VDLNKCEPWD 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFKAK TLVGMKKTLV 120 FYRGRAPKGE KTNWVMHEYR LEGKYSIYNL PKTAKNEWVI CRVFQKSPGG KKTHISGFSR 180 LSSYGNDLPP SVLPPLMDSS PHNSETRTGA GETSHVTCFS DPMEDQKTPE EMIDSFNTSL 240 LASSSSSDIS PTSILLSKTF LPSSAYTNQI IPNIGNLQYS DSFWMQDQSI LKMLLESPRV 300 NSRQNSKAEF SQDSVVSNPE MIQDPSCSAG PADLGCLWSY KI*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MENISSFRKE DEQMELPPGF RFHPTDEELI THYLSQKVLN SCFCAIAIGE VDLNKCEPWD  60
LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFKAK TLVGMKKTLV  120
FYRGRAPKGE KTNWVMHEYR LEGKYSIYNL PKTAKNEWVI CRVFQKSPGG KKTHISGFSR  180
LSSYGNDLPP SVLPPLMDSS PHNSETRTGA GETSHVTCFS DPMEDQKTPE EMIDSFNTSL  240
LASSSSSDIS PTSILLSKTF LPSSAYTNQI IPNIGNLQYS DSFWMQDQSI LKMLLESPRV  300
NSRQNSKAEF SQDSVVSNPE MIQDPSCSAG PADLGCLWSY KI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	13	172	17	174	NAC domain-containing protein 19
3swm_B	1e-53	13	172	17	174	NAC domain-containing protein 19
3swm_C	1e-53	13	172	17	174	NAC domain-containing protein 19
3swm_D	1e-53	13	172	17	174	NAC domain-containing protein 19
3swp_A	1e-53	13	172	17	174	NAC domain-containing protein 19
3swp_B	1e-53	13	172	17	174	NAC domain-containing protein 19
3swp_C	1e-53	13	172	17	174	NAC domain-containing protein 19
3swp_D	1e-53	13	172	17	174	NAC domain-containing protein 19
4dul_A	1e-53	13	172	14	171	NAC domain-containing protein 19
4dul_B	1e-53	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007032595.2	0.0	PREDICTED: NAC domain-containing protein 92
Swissprot	Q9FLJ2	1e-130	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A061EF12	0.0	A0A061EF12_THECC; NAC domain containing protein 80
STRING	EOY03521	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-129	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Thecc1EG018621t1
Entrez Gene	18601554

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]