PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG018486t1 | ||||||||
Common Name | TCM_018486 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 85aa MW: 9416.71 Da PI: 10.5508 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.2 | 7.8e-05 | 9 | 49 | 12 | 54 |
HHHHHHHHH.HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsaf.eeLrellPkaskapskKlsKaeiLekAveYIksL 54 R ++ N+ f +L ell ++ ++kK + + L k++ +Ik L Thecc1EG018486t1 9 RANENNEDFsLKLGELLSTN---KKKKRNASKLLDKTCSHIKRL 49 67777888877999******...*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.43E-5 | 20 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-4 | 20 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MSSKRSSARA NENNEDFSLK LGELLSTNKK KKRNASKLLD KTCSHIKRLN GEVDDLSNRI 60 SELMASPDTN KSIKANILTQ LLQQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007032502.1 | 5e-53 | PREDICTED: transcription factor ILI4 | ||||
TrEMBL | A0A061EFJ5 | 1e-51 | A0A061EFJ5_THECC; Uncharacterized protein | ||||
STRING | EOY03428 | 2e-52 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 2e-11 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG018486t1 |
Entrez Gene | 18601488 |
Publications ? help Back to Top | |||
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