PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG017284t1 | ||||||||
Common Name | TCM_017284 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 26897.4 Da PI: 9.6199 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.8 | 9.1e-36 | 15 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +p G+rFhPtdeelvv+yLk+k+ + +l++ +vi+e+d+++++Pw+Lp ++++ yfFs++ + + +k+ +ra+ sgyW++ gk+k++l Thecc1EG017284t1 15 MPIGYRFHPTDEELVVHYLKRKALSLPLPA-SVIPEFDVFQTDPWSLPG---DSKENRYFFSNSYGNDS-NKNCKRAAGSGYWQQIGKEKPIL 102 699***************************.99***************3...355678***99988765.57889999*************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++++vg++k L++ + ++++ +k +W++h+yrl Thecc1EG017284t1 103 ASgSNQVVGMRKALIYCERKRSSDTKIRWLLHQYRL 138 9966778***********999999**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-41 | 11 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.554 | 15 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-20 | 16 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MESSQNFVVN GGIKMPIGYR FHPTDEELVV HYLKRKALSL PLPASVIPEF DVFQTDPWSL 60 PGDSKENRYF FSNSYGNDSN KNCKRAAGSG YWQQIGKEKP ILASGSNQVV GMRKALIYCE 120 RKRSSDTKIR WLLHQYRLVG SAATLGSSQM SKWKLFGDWL VFRVFQRKRK AKKHRASSNK 180 SQITSAVTMP SCIDFTVEDC SVYGPPQPSS PSSSEITEVS LNGLDEEESS DFIGSYSNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-31 | 13 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-31 | 13 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-31 | 13 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-31 | 13 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-31 | 13 | 173 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-31 | 13 | 173 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 172 | QRKRKAKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007031956.2 | 1e-179 | PREDICTED: NAC domain-containing protein 83 | ||||
TrEMBL | A0A061EEQ1 | 1e-178 | A0A061EEQ1_THECC; NAC domain containing protein 83, putative | ||||
STRING | EOY02882 | 1e-179 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7874 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 8e-47 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG017284t1 |
Entrez Gene | 18601078 |
Publications ? help Back to Top | |||
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