PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016792t2
Common NameTCM_016792
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 444aa    MW: 48592.1 Da    PI: 7.9919
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016792t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.3e-32269322255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Thecc1EG016792t2 269 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 322
                       9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-15266322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28267322IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23269322IPR006447Myb domain, plants
PfamPF002498.1E-7270321IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MPLEGVFVEP SSNPIPDLSL HISPPKASTS MICSKSSEVI DTSFNLLSGH EVSKSNSGTS  60
MISDSQAYTE LSLARPHPAN VMEQERQCRR NSTGGAEQPS HTPLHLTHRH PHPTNTHLNH  120
INHGVSLLDV SNGARPIKGI PVYQNRSFPF PTLENLSRER DPKMCFYQIP YPSSSLYSSS  180
PSLSASPYFG GGLDPISILS SGSTQASPAY RSPATIRFNG ISKDAFKSHQ LHQQPQHSHY  240
GIGSSDTSNG LIRSRFLPKL PTKRSMRAPR MRWTSTLHAR FVHAVELLGG HERATPKSVL  300
ELMDVKDLTL AHVKSHLQMY RTVKTTDKPA ASSDGSGEED ISTAVSGSER GLRGLTDQIG  360
TSDGSLQQEL DYPCNPTTTM WSNSSREAWL HANSNDIDGV RGPLSFQSNR TEESCDSTPL  420
LNCKNPSLEF TLGRPDWHGT QHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16270324458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16270324458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16270324357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16270324357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16270324357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16270324357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16270324458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16270324458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16270324458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16270324458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16270324458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16270324458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974327.10.0PREDICTED: transcription repressor KAN1 isoform X2
TrEMBLA0A061ECZ30.0A0A061ECZ3_THECC; KANADI like transcription factor, putative isoform 2
STRINGEOY022660.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.14e-85G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]