PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG016426t2 | ||||||||
Common Name | TCM_016426 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 330aa MW: 36795.9 Da PI: 6.7929 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.3 | 8.6e-30 | 129 | 189 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs+edp ++eitY+g+H++ Thecc1EG016426t2 129 DDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPAIFEITYRGTHTCA 189 8***************************98899*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-29 | 123 | 189 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-26 | 126 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-41 | 128 | 190 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.93 | 129 | 186 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-27 | 129 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MEHGWHWEQE TLIGELIQGM ELAKQLRVHL GTASSVESRD LLVQKILSSY EKALLILKMN 60 RPVGQPQQNV GATSGVPESP LSTNGSPRSD DLEKDNQDIR DVSKKRKMLP RWTDQVRVSS 120 ESLLEGPHDD GYSWRKYGQK DILGAKYPRS YYRCTYRNTQ NCWATKQVQR SDEDPAIFEI 180 TYRGTHTCAL GNQAAVPPPA SPEKQEHKSN NLNYNNNQQW QSQDILLNFR KGLRVNTEGL 240 DNKGVAPSFS FPPSSFGCLT SENHTSSPSG VLDNNNILGS FSSPFMSPAT PELNYFSVSH 300 SQMNNLGGIL DARHAESVLT ELISANTSAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-20 | 129 | 188 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007040478.2 | 0.0 | PREDICTED: probable WRKY transcription factor 41 | ||||
Swissprot | Q9SUP6 | 8e-69 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | A0A061G542 | 0.0 | A0A061G542_THECC; WRKY family transcription factor, putative isoform 2 (Fragment) | ||||
STRING | EOY24979 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 7e-70 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG016426t2 |
Entrez Gene | 18606673 |