PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG016343t1

Common Name

TCM_016343

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 320aa MW: 36203.2 Da PI: 4.9207

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016343t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.4	4e-30	145	202	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers +dp++++itY+ eH h Thecc1EG016343t1 145 SDIWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSCSDPRIFIITYTAEHSH 202 79***********************998*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-30	130	205	IPR003657	WRKY domain
PROSITE profile	PS50811	32.96	139	205	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-25	141	205	IPR003657	WRKY domain
SMART	SM00774	1.0E-34	144	204	IPR003657	WRKY domain
Pfam	PF03106	7.6E-25	146	202	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MSEFYMENWD LRAVVGGSSN GACIPDMENP PFSFDPWSFQ QEDLIMSFPD VFETNPKVLD 60 ELEELYKPFY PEFNPFSTQT IITSSLPVPQ DEEKPESQKK QQPVSQSAVS GTNKDSTQTA 120 KPKRSSRKNQ QNRVVKHVTA DGLSSDIWAW RKYGQKPIKG SPYPRSYYRC SSSKGCLARK 180 QVERSCSDPR IFIITYTAEH SHGHPTRRSS LAGSTRSKSS STSKSLVNNN EPREAAETVL 240 SPTTMKDESV QQDWSMKVEE QMLEDGHGDK ILTPDIMLSD ELDQRLDNFE GLFLDQFPDW 300 SHELWSMNES ATLTGGCWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-18	132	205	1	74	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007040356.2	0.0	PREDICTED: probable WRKY transcription factor 29
TrEMBL	A0A061G6N0	0.0	A0A061G6N0_THECC; WRKY family transcription factor, putative
STRING	EOY24857	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6090	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	7e-41	WRKY family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG016343t1
Entrez Gene	18606594

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]