PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG016315t5 | ||||||||
Common Name | TCM_016315 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | TALE | ||||||||
Protein Properties | Length: 662aa MW: 73792 Da PI: 6.6766 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27 | 7.4e-09 | 432 | 469 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Thecc1EG016315t5 432 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 469 554459******************************88 PP | |||||||
2 | BELL | 119.1 | 1.9e-38 | 294 | 364 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elqk+k+kLls+leeVd+rY++y++q+++v+ssFeavag g+a +Y +lA+ka+SrhFrcL+d i++qi Thecc1EG016315t5 294 FIELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGTGAASVYSALASKAMSRHFRCLRDGIVSQI 364 579*******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.9E-61 | 231 | 362 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-47 | 237 | 360 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.179 | 410 | 473 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.57E-11 | 413 | 474 | No hit | No description |
SMART | SM00389 | 5.8E-9 | 413 | 477 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-17 | 414 | 479 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 416 | 479 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.9E-18 | 430 | 469 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MARELCEDKS RNMVSSTGFC YSDVSSGNAT MQTHLVNQIQ SFESNSEIFN LTTGMEMIGF 60 SKNLQQQGDS NTVMWKGFFN KHGTNPGPSS SKTISESTSD FYQHEFHKPE FTTGISETST 120 ENLIVGPESA PWQENRLLVD DSSLRCVFPC EGNERPSQGL SLSLSSSNPT SIGLQSFELR 180 QTSHSNHDQQ DDMRFIGSSS RDGFFGKPVN IQHQQQMIQD GFLGKAANLH HQGLFQLRSS 240 KYLGPAQELL NEFCSLGTKQ IDASKQKQIH KTKQWDDENG ASSSRKQALY SLDFIELQKR 300 KTKLLSMLEE VDRRYRHYCD QMKAVVSSFE AVAGTGAASV YSALASKAMS RHFRCLRDGI 360 VSQIQATRKA MGEKDPVAPG TTRGETPRLR VLDQALRQQK AFQQMSMMES HPWRPQRGLP 420 ERSVSVLRAW LFEHFLHPYP SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMVEEMYL 480 EEIKEHENNM ASSDGATDGD DNGRPNQNPP TDQKPTPDQL VRVDSECLSS IVTNPDKNDA 540 KSAKTLQNQH SHQPQNFGTY GAMELDFSSY SHHTAGGVSY GSDNANQNFN GGGVSLTLGL 600 QQHGGTGVSL AFSPASQSPL FYPRDHIEDC QQVQYSLLDG EGQHLPYRNL MGAQLLHDLA 660 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 419 | 477 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 419 | 477 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-15 | 419 | 476 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-15 | 419 | 476 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614497 | 5e-99 | JX614497.1 Gossypium hirsutum clone NBRI_GE57913 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007040323.2 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Refseq | XP_007040324.2 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-151 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A061G6K4 | 0.0 | A0A061G6K4_THECC; POX family protein isoform 1 | ||||
STRING | EOY24826 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-145 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG016315t5 |
Entrez Gene | 18606572 |
Publications ? help Back to Top | |||
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