PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG016068t1

Common Name

TCM_016068

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 383aa MW: 43761.8 Da PI: 9.821

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016068t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	137	160	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg++F +++ L +H + H Thecc1EG016068t1 137 YFCRVCGRRFYTNEKLINHFKQiH 160 78*****************88766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	5.6E-9	54	138	IPR029060	PIN domain-like
Pfam	PF01936	6.5E-7	59	289	IPR021139	NYN domain, limkain-b1-type
SuperFamily	SSF57667	6.36E-5	134	163	No hit	No description
PROSITE profile	PS50157	11.739	137	165	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.3E-4	139	162	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	139	160	IPR007087	Zinc finger, C2H2
CDD	cd06167	5.00E-14	154	296	No hit	No description
Gene3D	G3DSA:3.40.50.1010	5.6E-9	222	277	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MLHKFPNIFN SIQSTRTKAL NPWNSLYKYC HFKKKVGFDS LNSTSTSTST LASKTAQNRV 60 AIFWDLDNKP PNSFPPFEAA VKLKTAASSF GVVRSMVAYA NHHAFSYVPK VVREQRKERK 120 LLNQLENKGV IKSVEPYFCR VCGRRFYTNE KLINHFKQIH EREHQKRLNQ IEYARGSRRV 180 KLVAKYSMKM EKYRNAARDV LTPKVGYGLA DELKRAGFWI GTVSNKPQAA DVALRDHIVD 240 VMDKRKAECL VLVSDDSDFV GVLKEAKLRC LKTVVVGDIS DGALKRLADA GFSWTEILMG 300 KAKKEAVSVV GKWKDRDILK RLEWKYNPEV ERKLYSYGDE SEDQDFDSTD DGNDADCMHK 360 EDAGAWWDLD SDSDITSSQR RH*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MLHKFPNIFN SIQSTRTKAL NPWNSLYKYC HFKKKVGFDS LNSTSTSTST LASKTAQNRV  60
AIFWDLDNKP PNSFPPFEAA VKLKTAASSF GVVRSMVAYA NHHAFSYVPK VVREQRKERK  120
LLNQLENKGV IKSVEPYFCR VCGRRFYTNE KLINHFKQIH EREHQKRLNQ IEYARGSRRV  180
KLVAKYSMKM EKYRNAARDV LTPKVGYGLA DELKRAGFWI GTVSNKPQAA DVALRDHIVD  240
VMDKRKAECL VLVSDDSDFV GVLKEAKLRC LKTVVVGDIS DGALKRLADA GFSWTEILMG  300
KAKKEAVSVV GKWKDRDILK RLEWKYNPEV ERKLYSYGDE SEDQDFDSTD DGNDADCMHK  360
EDAGAWWDLD SDSDITSSQR RH*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007039972.2	0.0	PREDICTED: uncharacterized protein LOC18606352
TrEMBL	A0A061G4Y5	0.0	A0A061G4Y5_THECC; Zinc finger family protein
STRING	EOY24473	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11444	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-155	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG016068t1
Entrez Gene	18606352

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]