PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015956t1

Common Name

TCM_015956

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Nin-like

Protein Properties

Length: 361aa MW: 40874.1 Da PI: 6.1841

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015956t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.1	1.3e-26	269	318	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 + +++l+d++kyF+lpi++AA+ L++++TvLK+iCR+yG+ RWPhRki+s Thecc1EG015956t1 269 TRNLTLKDIEKYFHLPIEEAARRLDLSVTVLKKICRKYGVLRWPHRKIQS 318 689*********************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.791	259	339	IPR003035	RWP-RK domain
Pfam	PF02042	5.2E-23	271	318	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MEDPNSSVPN NNPNDMYPDG IFNFLDFENL VEDLTTQDIS VLSTFSIHDP SSEEIANDTI 60 DPLDDPVIRD FYNERNAGTS QAGFFGLSGV MNNPTEKNMG TESLNFENSM PLSVWPIEPV 120 PFGCSCCQVL REIVHTNGIN VTKLEIHGRL GIICHAILTD RSGSTNAVAP DHQYQMFDFC 180 KKSIQYVKQF LSQYCFHRSQ TGYVIVQDPL SGFYEALCVG FLWDENFNNG DFMQPSSSHA 240 GGFRMDQAGN SNNQGKHPKP SLSIQRERTR NLTLKDIEKY FHLPIEEAAR RLDLSVTVLK 300 KICRKYGVLR WPHRKIQSME KQIVFWTGKL NSNDPEERDR AAKIILKLQR GIAKIREGAR 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MEDPNSSVPN NNPNDMYPDG IFNFLDFENL VEDLTTQDIS VLSTFSIHDP SSEEIANDTI  60
DPLDDPVIRD FYNERNAGTS QAGFFGLSGV MNNPTEKNMG TESLNFENSM PLSVWPIEPV  120
PFGCSCCQVL REIVHTNGIN VTKLEIHGRL GIICHAILTD RSGSTNAVAP DHQYQMFDFC  180
KKSIQYVKQF LSQYCFHRSQ TGYVIVQDPL SGFYEALCVG FLWDENFNNG DFMQPSSSHA  240
GGFRMDQAGN SNNQGKHPKP SLSIQRERTR NLTLKDIEKY FHLPIEEAAR RLDLSVTVLK  300
KICRKYGVLR WPHRKIQSME KQIVFWTGKL NSNDPEERDR AAKIILKLQR GIAKIREGAR  360
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007039825.2	0.0	PREDICTED: uncharacterized protein LOC18606248
TrEMBL	A0A061G426	0.0	A0A061G426_THECC; Uncharacterized protein
STRING	EOY24326	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	5e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015956t1
Entrez Gene	18606248

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]