PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015926t2 | ||||||||
Common Name | TCM_015926 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 256aa MW: 28011.4 Da PI: 6.6358 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.7 | 4.7e-12 | 20 | 64 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r Rt+ q+ s+ qky Thecc1EG015926t2 20 PWTEEEHRMFLLGLQKLGKGDWRGISRNYVISRTPTQVASHAQKY 64 8*****************************89************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.634 | 13 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.03E-17 | 14 | 70 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-10 | 17 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-11 | 17 | 63 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.0E-19 | 17 | 68 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 3.40E-9 | 20 | 65 | No hit | No description |
Pfam | PF00249 | 1.7E-10 | 20 | 64 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0030307 | Biological Process | positive regulation of cell growth | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:2000469 | Biological Process | negative regulation of peroxidase activity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MLPRILSPGR LRVVKEKGVP WTEEEHRMFL LGLQKLGKGD WRGISRNYVI SRTPTQVASH 60 AQKYFIRQSN VSRRKRRSSL FDIVADESVD TAMVSQDLFS ANHLQAETQS NDQLPVPPPL 120 DEEDESMDSN NSNDGEAVPP KSESSQPCYP VVYPAYFPPF IPFSFPYWMG GNTEPTKKDT 180 HEVVKPTAVH SKSPINVDEL VGMSKLSLGE SIGDNGPSSL SLKLLDGSSR QSAFHANPAS 240 GSSSMNSSGS PIHAV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00551 | DAP | Transfer from AT5G47390 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017973413.1 | 1e-177 | PREDICTED: transcription factor MYB1R1 | ||||
Swissprot | Q7XC57 | 1e-84 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A061G3Y6 | 0.0 | A0A061G3Y6_THECC; Myb-like transcription factor family protein isoform 2 | ||||
STRING | EOY24275 | 1e-176 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 1e-59 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015926t2 |
Entrez Gene | 18606223 |
Publications ? help Back to Top | |||
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