PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015563t1 | ||||||||
Common Name | TCM_015563 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Trihelix | ||||||||
Protein Properties | Length: 793aa MW: 85742.9 Da PI: 5.6228 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 96.7 | 2e-30 | 98 | 182 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ k+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea Thecc1EG015563t1 98 RWPRQETLALLKIRSDMDAAFRDATVKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSQLEA 182 8*********************************************************************866665..*******85 PP | |||||||
2 | trihelix | 109.8 | 1.7e-34 | 531 | 616 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a Thecc1EG015563t1 531 RWPKAEVLALINLRSGLESRYQEAGPKGPLWEEISAGMSRMGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 616 8*********************************************************************8.99999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0064 | 95 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 6.33E-28 | 97 | 162 | No hit | No description |
PROSITE profile | PS50090 | 6.597 | 97 | 155 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 6.4E-21 | 97 | 183 | No hit | No description |
PROSITE profile | PS50090 | 6.806 | 524 | 588 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.023 | 528 | 590 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 9.03E-32 | 530 | 595 | No hit | No description |
Pfam | PF13837 | 8.1E-24 | 530 | 617 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0030308 | Biological Process | negative regulation of cell growth | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:2000038 | Biological Process | regulation of stomatal complex development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 793 aa Download sequence Send to blast |
MQQGGGEGGG GHQSQYGEMG APTTAVATTT GAVSSSHMVS EQSEQLVEAA SPISSRPPAT 60 GNLDEFMRLA SGGGDDGGDE GDRAGGGGGG AGVASGNRWP RQETLALLKI RSDMDAAFRD 120 ATVKGPLWED VSRKLAELGY KRSAKKCKEK FENVHKYYKR TKEGRAGRQD GKSYKFFSQL 180 EALHTTSSAT AAANLSTPVT PVTAASTASL DVAPVSVGVH MPISSVRIPP ATIPMSSSML 240 AMPGSAPASV PVPPVGAAPA SGHPITTTAA PFGISFSSNS SSSSQGFEDD DDDDDEEDEP 300 GGEPSNMAGT SRKRKRQSSR GGGSTTRRMM EFFEGLMKQV MQKQESMQQR FLEAIEKREQ 360 DRMIREEAWK RQEMARLTRD HELMAHERAI AASRDAAIIS FLQKITGQTV QLPTTVTVSA 420 APPPPTQPAV PVVPPPASIP TAASPLHHPP SLPQQQRSSQ QQQQSVQPHH QHQQQPQAVH 480 QQQHQAQPQN TEVVRHHQQP ISSDVVMAIP EQQVPPQEIG RSGNLEPASS RWPKAEVLAL 540 INLRSGLESR YQEAGPKGPL WEEISAGMSR MGYKRSAKRC KEKWENINKY FKKVKESNKK 600 RPEDAKTCPY FHQLDALHRK KILGGGTSGG FSSFSDQNRP QEETSQQHLD TSEAPPITAA 660 PQSTQPTDQS ENKTGATADV LTRKEGLPGS FCGEGNGEAA KKPEDIVMEL MEDQGMHHQG 720 QSLLVDGYGK IDEPDSDNMV HEEDEDEDED DEDDDELEEE RKMAYKIEYQ RQNASTPNGG 780 GNGAPSFLAM VQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 148 | KRSAKKCKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007039268.2 | 0.0 | PREDICTED: trihelix transcription factor GTL1 isoform X1 | ||||
TrEMBL | A0A061G9R2 | 0.0 | A0A061G9R2_THECC; Duplicated homeodomain-like superfamily protein, putative isoform 1 | ||||
STRING | EOY23769 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6226 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 5e-48 | GT-2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015563t1 |
Entrez Gene | 18605904 |
Publications ? help Back to Top | |||
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