PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015430t1 | ||||||||
Common Name | TCM_015430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Nin-like | ||||||||
Protein Properties | Length: 256aa MW: 29131.3 Da PI: 6.9268 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.6 | 4e-26 | 146 | 195 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++l++++kyF+ pi +AAke++v+lTvLK++CR+++I+RWPhRkiksl Thecc1EG015430t1 146 APLELDEIQKYFDFPISKAAKEMNVGLTVLKKRCRELNIMRWPHRKIKSL 195 6799********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.166 | 129 | 216 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.5E-22 | 148 | 195 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDSTNLNFPK LVNAPDFDWF NFEENPFGTA LELLPFVVDG FYDFNDYNFN SLAPPGRINY 60 VEFKDFEDIS GDFALFENTS TLPSLHEDIL VDAKPLKAMV GPLGQYCGNI TNIGGSSETL 120 TVIQSDYGAS SGHGEQRRIS GRKRTAPLEL DEIQKYFDFP ISKAAKEMNV GLTVLKKRCR 180 ELNIMRWPHR KIKSLTALIN NVKELGLTNE IMMLEDHKRL LEKLPDMELT ERTKKLRQAC 240 FKANYKKRRS LAACY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007039079.2 | 0.0 | PREDICTED: protein RKD4 | ||||
TrEMBL | A0A061G154 | 0.0 | A0A061G154_THECC; RWP-RK domain-containing protein, putative | ||||
STRING | EOY23580 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12585 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 1e-45 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015430t1 |
Entrez Gene | 18605785 |
Publications ? help Back to Top | |||
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