PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015255t4
Common NameTCM_015255
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 299aa    MW: 32820.9 Da    PI: 9.6672
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015255t4genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-123983147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Thecc1EG015255t4 39 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 83
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-163389IPR009057Homeodomain-like
PROSITE profilePS5129414.183488IPR017930Myb domain
TIGRFAMsTIGR015571.4E-183786IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.0E-63789IPR009057Homeodomain-like
SMARTSM007176.5E-103886IPR001005SANT/Myb domain
PfamPF002494.2E-103983IPR001005SANT/Myb domain
CDDcd001671.06E-74184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MALPGLAPFT TTATAASTAS SAEDPNKKIR KPYTITKSRE SWTEPEHDKF LEALQLFDRD  60
WKKIEAFVGS KTVIQIRSHA QKYFLKVQKN GTSEHLPPPR PKRKAAHPYP QKASKNAQPH  120
QQVSGSFQSS AALLDTGYVL RSDPSSMLMN PNTSAAASSW TNNAQTVSFS QAKKGSGLAN  180
NSCSSTESTP KTRQIGEMTD QGNHGHALRV LPDFAQVYSF IGSIFDPNVT GHLQKLKKMD  240
PIDVETVLLL MRNLSINLTS PDFEDHRRLL SSYEIETEAI DHGGVCKAVH NDQSKSIT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973016.10.0PREDICTED: protein REVEILLE 6 isoform X2
SwissprotQ8H0W31e-139RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A061G2920.0A0A061G292_THECC; Homeodomain-like superfamily protein isoform 4
STRINGEOY233250.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-116MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]