PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015076t2
Common NameTCM_015076
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 321aa    MW: 34873.4 Da    PI: 8.7418
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015076t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33.1e-09108129426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       + C+++ + G C+yGd+C+F H+
  Thecc1EG015076t2 108 KVCNYWVQ-GNCNYGDKCRFLHS 129
                       68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.52550IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.8832551IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591104131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-7105129IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-7106130IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-7107129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-8108128IPR000571Zinc finger, CCCH-type
SuperFamilySSF509783.02E-19125312IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.9E-18129313IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.034135174IPR001680WD40 repeat
PROSITE profilePS5029411.603142183IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.346142183IPR001680WD40 repeat
PROSITE patternPS006780161175IPR019775WD40 repeat, conserved site
SMARTSM0032045214273IPR001680WD40 repeat
SMARTSM00320320276312IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDLDGGNRRV FNRLGGPSTA PTDSSKHQKV CYHWRAGKCN RFPCPFLHRE LPAPGPAATA  60
NGSGAPKRFA DDSGFSGPAA RRGPNFNNNH HNSWGRMGAN KVVRKTEKVC NYWVQGNCNY  120
GDKCRFLHSW SLGEGFTMLS HLDGHQKVVS GIALPAGLDK LYTGSKDETV RAWDTNSGQC  180
TCVINLGGEV GCMISEGPWL FVGIPNVVKA WNTQTNYELS LTGPVGQVYA MVVGNDLLFA  240
GTQGLLNLRG MHDSESKPVL LCTCNDNSVR LYDLPSFSER GKIFAKQEIR AIEVGPGGLF  300
FTGDGTGYRV WKWAQPIATS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6145875e-88JX614587.1 Gossypium hirsutum clone NBRI_GE58084 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972995.10.0PREDICTED: zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ21e-118C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A061G1000.0A0A061G100_THECC; Zinc finger WD40 repeat protein 1 isoform 2
STRINGEOY230721e-180(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-121zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]