PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015044t3

Common Name

TCM_015044

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MIKC_MADS

Protein Properties

Length: 199aa MW: 23098.6 Da PI: 9.517

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015044t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.8	1.9e-30	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +rienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkl e+ Thecc1EG015044t3 9 ERIENKINRQVTFSKRRNGMLKKAYELSVLCDAEVALIIFSSRGKLSEFG 58 69**********************************************95 PP
2	K-box	86.8	4.3e-29	81	169	11	99
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++l+qe+ kLk+++e+Lqr+qRhl Ge+Le+Ls+keL ++e+qL+++l++ R+kK +llle +eel+kke el++enk+L+++le Thecc1EG015044t3 81 MDETQTLYQEVLKLKAKYESLQRSQRHLFGEELEPLSIKELYKIEKQLDRALTQARQKKVQLLLERMEELRKKEVELEDENKRLQSQLE 169 45689********************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.3E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.399	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-32	2	89	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.79E-39	2	69	No hit	No description
PRINTS	PR00404	3.0E-30	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-30	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.7E-24	82	168	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	16.004	84	174	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MGRGKVVLER IENKINRQVT FSKRRNGMLK KAYELSVLCD AEVALIIFSS RGKLSEFGSS 60 TVSQTLEKYW QHRYTSNVHL MDETQTLYQE VLKLKAKYES LQRSQRHLFG EELEPLSIKE 120 LYKIEKQLDR ALTQARQKKV QLLLERMEEL RKKEVELEDE NKRLQSQLEL EQSFPAAQGL 180 GDPNIEAAPV TGTISLFPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-21	1	72	1	72	MEF2C
5f28_B	4e-21	1	72	1	72	MEF2C
5f28_C	4e-21	1	72	1	72	MEF2C
5f28_D	4e-21	1	72	1	72	MEF2C
6byy_A	4e-21	1	72	1	72	MEF2 CHIMERA
6byy_B	4e-21	1	72	1	72	MEF2 CHIMERA
6byy_C	4e-21	1	72	1	72	MEF2 CHIMERA
6byy_D	4e-21	1	72	1	72	MEF2 CHIMERA
6bz1_A	4e-21	1	72	1	72	MEF2 CHIMERA
6bz1_B	4e-21	1	72	1	72	MEF2 CHIMERA
6bz1_C	4e-21	1	72	1	72	MEF2 CHIMERA
6bz1_D	4e-21	1	72	1	72	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973050.1	1e-134	PREDICTED: MADS-box transcription factor 6 isoform X3
Swissprot	Q8LLR1	2e-78	MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBL	A0A061G7L7	1e-142	A0A061G7L7_THECC; AGAMOUS LIKE6-like protein, putative isoform 3 (Fragment)
STRING	EOY23033	1e-131	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-57	AGAMOUS-like 6

Link Out ? help Back to Top
Phytozome	Thecc1EG015044t3
Entrez Gene	18605460

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]