PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014762t1
Common NameTCM_014762
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 297aa    MW: 33002.1 Da    PI: 9.428
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014762t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19112161255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  Thecc1EG014762t1 112 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALRFKG 161
                       7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.7E-33111170IPR001471AP2/ERF domain
PROSITE profilePS5103224.948112169IPR001471AP2/ERF domain
SMARTSM003801.9E-37112175IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22112170IPR016177DNA-binding domain
CDDcd000181.44E-19112170No hitNo description
PfamPF008471.2E-13112161IPR001471AP2/ERF domain
PRINTSPR003672.1E-11113124IPR001471AP2/ERF domain
PRINTSPR003672.1E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MLDRGFQHSK AYIKGENPKT YKVDPRQGKR PLSPDESEEK EEDHIFPVYS ARSQQDMNAM  60
VQALAQVIGN NNSNNNNNSN PFQPHDQHPT YQSDTAGQQN QSQDQGNVRR RHYRGVRQRP  120
WGKWAAEIRD PKKAARVWLG TFETAEAAAL AYDEAALRFK GSKAKLNFPE RVQGRSELGY  180
LTTRRDVERA VALPPPFPPP SQTTYPNLSQ YAHLLSGGSG NALNYALPGA HGASPFTSHA  240
TLSSSSSSSS TTLTSQQQQQ QQDYFGGFLL QFGGSSAPGS DPPTNRRDYD YYYSRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-27111172466ATERF1
3gcc_A9e-27111172466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972842.11e-128PREDICTED: ethylene-responsive transcription factor ERF115
SwissprotQ9FH544e-59EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A061FZL70.0A0A061FZL7_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOY226560.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.19e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]