PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG014288t1

Common Name

TCM_014288

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

TCP

Protein Properties

Length: 370aa MW: 41030.6 Da PI: 7.0513

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG014288t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.1	8.1e-31	49	188	3	134
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk i+WLl + k+ i++l+ ++ ++ +++ + +snss++ Thecc1EG014288t1 49 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKVIDWLLDATKTDIDKLPPLQMPPGFGQfHQQMLVPHESNSSQSslapff 141 79***********************************************************888884444344444444433333556778 PP TCP 89 .kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 +++ + + +++++ a+ +++++ rak+++ +re+t+ + k+ Thecc1EG014288t1 142 eANSMFMKDGEDPSIAAKRYWDMDAALRAKSKEVERESTTAAEKGKW 188 6666666688888888999999999*******9998877666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-27	50	185	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.79	50	108	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MISSPREKDF QAKQEGETND GKFSKGSSSS RQWSGFRNPR IVRVSRSFGG KDRHSKVCTI 60 RGLRDRRIRL SVPTAIQLYD LQERLGLSQP SKVIDWLLDA TKTDIDKLPP LQMPPGFGQF 120 HQQMLVPHES NSSQSSLAPF FEANSMFMKD GEDPSIAAKR YWDMDAALRA KSKEVEREST 180 TAAEKGKWIK VTEQHENQDG IGDYSGQASS QKHFPVANHS SLPGLSNTAM PFNSYYHWEP 240 SSLSLSQFGN HGFLSQTENF LHGNTTVPLP SSLALPSAHA PQLFFCPPST MPSLFPSYPP 300 YVTTTPGDSS DSRQINHFQL LSSSSQHILP NSVTMSPSMK PFSLNVNAGL RTHTQNDDES 360 HADEDNIDS*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MISSPREKDF QAKQEGETND GKFSKGSSSS RQWSGFRNPR IVRVSRSFGG KDRHSKVCTI  60
RGLRDRRIRL SVPTAIQLYD LQERLGLSQP SKVIDWLLDA TKTDIDKLPP LQMPPGFGQF  120
HQQMLVPHES NSSQSSLAPF FEANSMFMKD GEDPSIAAKR YWDMDAALRA KSKEVEREST  180
TAAEKGKWIK VTEQHENQDG IGDYSGQASS QKHFPVANHS SLPGLSNTAM PFNSYYHWEP  240
SSLSLSQFGN HGFLSQTENF LHGNTTVPLP SSLALPSAHA PQLFFCPPST MPSLFPSYPP  300
YVTTTPGDSS DSRQINHFQL LSSSSQHILP NSVTMSPSMK PFSLNVNAGL RTHTQNDDES  360
HADEDNIDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-17	55	109	1	55	Putative transcription factor PCF6
5zkt_B	1e-17	55	109	1	55	Putative transcription factor PCF6
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00008	PBM	Transfer from 496250	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU282258	2e-78	GU282258.1 Populus balsamifera isolate RNA13 haplotype A putative TCP family transcription factor gene, partial sequence.
GenBank	GU282259	2e-78	GU282259.1 Populus balsamifera isolate RNA13 haplotype B putative TCP family transcription factor gene, partial sequence.
GenBank	GU282260	2e-78	GU282260.1 Populus balsamifera isolate INU03 haplotype A putative TCP family transcription factor gene, partial sequence.
GenBank	GU282262	2e-78	GU282262.1 Populus balsamifera isolate NWL07 haplotype A putative TCP family transcription factor gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007037593.1	0.0	PREDICTED: transcription factor TCP5
TrEMBL	A0A061G4Y7	0.0	A0A061G4Y7_THECC; Teosinte branched 1, putative
STRING	EOY22094	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	2e-60	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Link Out ? help Back to Top
Phytozome	Thecc1EG014288t1
Entrez Gene	18604854

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]