PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG013233t1 | ||||||||
Common Name | TCM_013233 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ZF-HD | ||||||||
Protein Properties | Length: 179aa MW: 19820 Da PI: 7.9487 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 89.1 | 4.2e-28 | 9 | 58 | 5 | 57 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 Y+eCl+NhAaslG++a+DGCgEf+ + +++++ l+CaACgCHRnFHR+ + Thecc1EG013233t1 9 LYRECLRNHAASLGSYATDGCGEFTLD---DTSPSNLQCAACGCHRNFHRKVS 58 6*************************8...6789****************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.3E-24 | 9 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.1E-24 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-17 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.254 | 10 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-28 | 95 | 161 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.27E-16 | 95 | 160 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.2E-29 | 102 | 159 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MEKEYPNDLY RECLRNHAAS LGSYATDGCG EFTLDDTSPS NLQCAACGCH RNFHRKVSYC 60 SSSRSHGDPE NTVELIDYGD GGSGGRRPVV VESTGAADRC GKKRFRTKFT AEQKEKMLGF 120 AEKLGWKLQR RDEEDEVEKF CRAIGVSRQV FKVWMHNHKS SSSTSSASTC NVSSLTTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-22 | 103 | 165 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007037025.1 | 1e-132 | PREDICTED: zinc-finger homeodomain protein 10 | ||||
Swissprot | Q9SEZ1 | 5e-40 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A061FW93 | 1e-130 | A0A061FW93_THECC; ZF-HD homeobox protein | ||||
STRING | EOY21526 | 1e-131 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18527 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 5e-42 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG013233t1 |
Entrez Gene | 18604462 |
Publications ? help Back to Top | |||
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