PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG013117t4

Common Name

TCM_013117

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 365aa MW: 40012.7 Da PI: 9.5075

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG013117t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.6e-32	242	295	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Thecc1EG013117t4 242 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 295 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.31E-15	238	296	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.3E-29	240	296	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.9E-24	242	295	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-7	243	294	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MSHKGGFSKQ SLNRIPDLSL HISPPNSAPS SICTGTNEGD SSFDIWRKDD GLKSHSDSSI 60 KAGSQADTEL SLANPASSAL EAESPWQRNF AGGVTDDDQI KHRNLLKRGN TNSGQLSNIN 120 HGISLLDVSG LKPIKGIPVY NNSMSFPFSS SDSLVDMDPN KLRFYHQSCP SYNCSSSTSA 180 VLHSPDAYRI GSAPRFNGIS METLRPQFHH QYTQYGAADL CNGMIRSRFM PKLQSKRTMR 240 APRMRWTSSL HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTVKSTD 300 KPAASSDGSG EEDYLPARNT ISQIANCSVN QRSSASPNLS IQQDNGHSPT NLWSNSSRKA 360 VLLNK

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MSHKGGFSKQ SLNRIPDLSL HISPPNSAPS SICTGTNEGD SSFDIWRKDD GLKSHSDSSI  60
KAGSQADTEL SLANPASSAL EAESPWQRNF AGGVTDDDQI KHRNLLKRGN TNSGQLSNIN  120
HGISLLDVSG LKPIKGIPVY NNSMSFPFSS SDSLVDMDPN KLRFYHQSCP SYNCSSSTSA  180
VLHSPDAYRI GSAPRFNGIS METLRPQFHH QYTQYGAADL CNGMIRSRFM PKLQSKRTMR  240
APRMRWTSSL HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTVKSTD  300
KPAASSDGSG EEDYLPARNT ISQIANCSVN QRSSASPNLS IQQDNGHSPT NLWSNSSRKA  360
VLLNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	243	297	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	243	297	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	243	297	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	243	297	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	243	297	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	243	297	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	243	297	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	243	297	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	243	297	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	243	297	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	243	297	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	243	297	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:11395775, ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:14561401, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928, ECO:0000269\|PubMed:18849474, ECO:0000269\|PubMed:20179097}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269\|PubMed:18849474}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007036996.2	0.0	PREDICTED: transcription repressor KAN1 isoform X3
Swissprot	Q93WJ9	2e-60	KAN1_ARATH; Transcription repressor KAN1
TrEMBL	A0A061FX92	0.0	A0A061FX92_THECC; Homeodomain-like superfamily protein, putative isoform 4 (Fragment)
STRING	EOY21494	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	1e-58	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG013117t4
Entrez Gene	18604445

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang T,Kerstetter RA,Irish VF APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J. Exp. Bot., 2014. 65(4): p. 1181-91 [PMID:24449383] Mach J Getting in Shape? Leaves work it out with KANADI1. Plant Cell, 2014. 26(1): p. 4 [PMID:24464293] Jun SE, et al. Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. Mol. Cells, 2015. 38(3): p. 243-50 [PMID:25518926] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Xie Y, et al. Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways. Plant Physiol., 2015. 169(2): p. 1240-53 [PMID:26246448] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Singh A, et al. Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 3408 [PMID:28611467] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]