PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012330t1
Common NameTCM_012330
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 380aa    MW: 43656.9 Da    PI: 4.5285
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012330t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63e-1383126451
               AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaark 51 
                       kGVr+++ +g++++eIrd +     r kr +lg++ t+eeAa+ +   ++
  Thecc1EG012330t1  83 KGVRRRP-WGKFASEIRDpF-----RkKRLWLGTYTTEEEAAAVYQTKKR 126
                       9******.**********76.....45***************98866665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.25381143IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1481127IPR016177DNA-binding domain
PRINTSPR003671.0E-68293IPR001471AP2/ERF domain
SMARTSM003807.0E-1283140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-1883128IPR001471AP2/ERF domain
CDDcd000184.93E-1883121No hitNo description
PfamPF008478.2E-783119IPR001471AP2/ERF domain
PRINTSPR003671.0E-6104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MKNSDKENME PSLNLPKKLR IVYNDPDVTD SSSDEEEIKL KNKILGTKRV VKEISHSAVP  60
CEFTKEDDVS ESKRARKFSS MSKGVRRRPW GKFASEIRDP FRKKRLWLGT YTTEEEAAAV  120
YQTKKREFEV MMTAEQENNN SFTVKSEDTN YSQLSPSSVL DDVSVNPVMK EHVVKKVVKE  180
YKIFQEHKTV EQSASIKDVS ADLWKDEASV MDLWELPSDS WEETFKPVSA KDLWKDEASV  240
ANLWEPPSDS WKKTFEPASV KDLWKDEAFV MNLCEPPSET FEPASVKDLW KDENSVKDLW  300
EPPSASESWN ELFESGAVEN YMNLCSSVLE SYMNFWLNDN AANYQQPLVE NAKDKFINPP  360
DIALDNKNTA WLDEIVLQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17288KRARKFSSMSKGVRRRP
285104RRRPWGKFASEIRDPFRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972433.10.0PREDICTED: ethylene-responsive transcription factor ERF117 isoform X1
TrEMBLA0A061G1U60.0A0A061G1U6_THECC; Uncharacterized protein
STRINGEOY210140.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2072045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.11e-20ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]