PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012262t1
Common NameTCM_012262
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 297aa    MW: 31835.5 Da    PI: 8.0039
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012262t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08554247
                      SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                      g W+ e ++ + +a++++ ++     +W++Ia++++  ++l+++k ++q +
  Thecc1EG012262t1  5 GTWSREVEKAFENAIAMHWTEegseeQWEKIASMVP-SKSLEELKQHYQLL 54
                      89**********************************.***********965 PP
2Myb_DNA-binding38.91.9e-12135179347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Thecc1EG012262t1 135 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 179
                       7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.609258IPR017884SANT domain
SMARTSM007171.9E-4357IPR001005SANT/Myb domain
PfamPF002495.3E-6453IPR001005SANT/Myb domain
CDDcd001671.70E-6655No hitNo description
SuperFamilySSF466891.08E-7761IPR009057Homeodomain-like
PROSITE profilePS5129417.282127184IPR017930Myb domain
SuperFamilySSF466897.18E-17130185IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-17132182IPR006447Myb domain, plants
SMARTSM007172.3E-10132182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-11133178IPR009057Homeodomain-like
CDDcd001679.73E-10135180No hitNo description
PfamPF002497.2E-11135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAGTGTWSRE VEKAFENAIA MHWTEEGSEE QWEKIASMVP SKSLEELKQH YQLLVEDVSA  60
IEAGQVPLPS YTGEEATSSV AKDFHGSSGA AAAAAPDKRS SSGYGNGFSG LSHDSCGHGG  120
KGSSRSDQER RKGIPWTEEE HRLFLLGLDK FGKGDWRSIS RNFVISRTPT QVASHAQKYF  180
IRLNSMNRDR RRSSIHDITS VNNGDTSHQA PITGQQANTN SPAAAAAMGP SVKHRAQPHM  240
PGLGMYGAPV GRPVAAPGHM ASAVGTPVML PPGHHHHPPP YIVPVAYPMA PPPMHQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036438.20.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN63e-85SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A061G1M00.0A0A061G1M0_THECC; Duplicated homeodomain-like superfamily protein
STRINGEOY209390.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-78MYB family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]