PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011578t1 | ||||||||
Common Name | TCM_011578 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 305aa MW: 32945.2 Da PI: 6.4065 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.2 | 6.1e-32 | 164 | 221 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+ Thecc1EG011578t1 164 EDGYRWRKYGQKAVKNSPYPRSYYRCTNSKCTVKKRVERSSEDPTTVITTYEGQHCHH 221 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.5E-33 | 148 | 222 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-28 | 155 | 221 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.953 | 158 | 223 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.3E-37 | 163 | 222 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-25 | 164 | 221 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MEDKEGADPR NEFTSDSSWT LPGPDPVSDS VNYFFDRESS ILSEFGWNLQ PDQAEEIERF 60 GELDRTATRP DLAGNFSGSQ SSGAAAAAAA GSGSGTATNL SGSADVSTSN PSVSSSSSED 120 PPEKSTGSGG KPPEIPSKVR KKGQKRIRQP RFAFVTKSEV DHLEDGYRWR KYGQKAVKNS 180 PYPRSYYRCT NSKCTVKKRV ERSSEDPTTV ITTYEGQHCH HSVGFPRGGL ISHEAAFAGQ 240 LTPAISQFYY PGVQLHREIP PSITQSHQVP IDVGGSRALP EPTPQLPTDE GLLGDIVPPG 300 MRNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-26 | 156 | 220 | 10 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 7e-26 | 156 | 220 | 10 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021299838.1 | 0.0 | probable WRKY transcription factor 57 | ||||
Refseq | XP_021299839.1 | 0.0 | probable WRKY transcription factor 57 | ||||
Swissprot | Q9C983 | 7e-76 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | A0A061EHJ3 | 0.0 | A0A061EHJ3_THECC; WRKY DNA-binding protein 57 isoform 1 | ||||
STRING | EOY01749 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4995 | 27 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 1e-64 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011578t1 |
Entrez Gene | 18610286 |
Publications ? help Back to Top | |||
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