PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011217t1 | ||||||||
Common Name | TCM_011217 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ZF-HD | ||||||||
Protein Properties | Length: 184aa MW: 21064.1 Da PI: 10.8636 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 74.5 | 1.6e-23 | 3 | 52 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 k +Y++C++NhA lGg+a+DGC Ef+ps+++ +C ACgCHRn+HR+ + Thecc1EG011217t1 3 KETYRDCQRNHACYLGGYAIDGCSEFIPSNNK-----ESHCKACGCHRNYHRKVP 52 679*************************9544.....579************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.0E-19 | 5 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.8E-18 | 5 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-10 | 6 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 21.9 | 6 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-14 | 98 | 163 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.53E-6 | 100 | 162 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.2E-22 | 106 | 163 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEKETYRDCQ RNHACYLGGY AIDGCSEFIP SNNKESHCKA CGCHRNYHRK VPFIYSKEYP 60 EIGHRSGKSF WSLREAKRIA RQHRVLPAPS PQVLVLKQQN SNRKFKQRKS KFTGGQREAM 120 RALAESLGWT MRNKGRQTEI NRFCGRIGVS RLHFKTWLNN NKKLYFKGTA SMSGANSSSS 180 KAV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 108 | NRKFKQRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00143 | DAP | Transfer from AT1G14687 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007045440.2 | 1e-133 | PREDICTED: zinc-finger homeodomain protein 14 | ||||
TrEMBL | A0A061EA71 | 1e-135 | A0A061EA71_THECC; Homeobox protein 32, putative | ||||
STRING | EOY01272 | 1e-135 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13728 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14687.1 | 1e-38 | homeobox protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011217t1 |
Entrez Gene | 18609986 |
Publications ? help Back to Top | |||
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