PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG011166t1

Common Name

TCM_011166

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 314aa MW: 35084.9 Da PI: 7.0378

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011166t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.4	3.3e-33	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Thecc1EG011166t1 19 PRLRWTPELHHCFVHAIERLGGQDKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.47	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-32	15	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-16	17	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-24	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	8.6E-9	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGSCGRSGAV RQYIRSKVPR LRWTPELHHC FVHAIERLGG QDKATPKLVL QLMDVKGLTI 60 SHVKSHLQMY RSMRSDLGRQ DRSSTHQRRQ SFENHDGCVD EVSDLVFHST SKPLEESDSH 120 LIYSPPPSKR ARIETRSSIS DQNLQCSQGI CETVSNPYSF DDYLQTMAVH KGIKEGNGAF 180 MWEHTQSHSQ GQSTTFSLPY DIYNLNSFKY SMGEPDFLKV AKVEAEDHHT HVEQIVRRHA 240 GDEEEAYGGC ELSLSLSLHH HPSSQKSNTS STSEISSSEA FSLYSRSSYK DCSGTSSAQR 300 SVNLDLSIAL CGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007045387.2	0.0	PREDICTED: uncharacterized protein LOC18609950
TrEMBL	A0A061EG23	0.0	A0A061EG23_THECC; Homeodomain-like superfamily protein, putative isoform 1
STRING	EOY01220	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	3e-35	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG011166t1
Entrez Gene	18609950

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]