PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG011145t4 | ||||||||
Common Name | TCM_011145 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 595aa MW: 63564.5 Da PI: 9.4425 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3.1e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Thecc1EG011145t4 71 FICEVCNKGFQREQNLQLHRRGH 93 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Thecc1EG011145t4 147 WKCEKCSKRYAVQSDWKAHSKTC 169 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.6E-6 | 70 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.84E-7 | 70 | 93 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 2.9E-5 | 71 | 93 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0052 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.84E-7 | 142 | 167 | No hit | No description |
SMART | SM00355 | 130 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 595 aa Download sequence Send to blast |
MAAASSSTPF FGTREENQTQ MIQQQSSSTP TSSTAPTTAP QKKKRNQPGT PNPDAEVIAL 60 SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLR QKTTKEVKRK VYLCPEPTCV 120 HHDPSRALGD LTGIKKHYSR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAQ ESARHPTNLS TMGSHLFGSN HMSLGLSQVG SQIPSLQDQN 240 QPPSNMLRLG SAGAAKFEHL IPPSNPSPLQ NMPTSAFFMP DANQGFHHQD HQSHHGHGPF 300 LNKPLHGLMQ LPDLQGNTNN TPASTNLFNL GFFPNNSAAS SISTSENASA STANLPNSGF 360 LSPNQFNSGN GGGGGQGTAM FSTNMGDQVG SGLSSLYSTS MQHENISPHM SATALLQKAA 420 QMGSTTSNNT SSLLRGLGSS SASGSKSDRP VLSANFGSNY GGGGGETLRS QMENDSNLQG 480 LMNSLANGNS SIFGAGHGQD SNFGGFSGSG MTLDQQSNNA NFCNVNEAKL HQNLAASIGG 540 TDKLTLDFLG VGGMVRNMGG GFSQREQHGI NISSLDPEVK SAQANQQFGS AKLL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-34 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-34 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC208494 | 1e-141 | AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007045367.2 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic isoform X1 | ||||
Refseq | XP_007045368.2 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic isoform X1 | ||||
Refseq | XP_007045369.2 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic isoform X1 | ||||
Refseq | XP_007045370.2 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic isoform X1 | ||||
Swissprot | Q9ZUL3 | 1e-144 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A061EG08 | 0.0 | A0A061EG08_THECC; Indeterminate(ID)-domain 5, putative isoform 2 | ||||
STRING | EOY01198 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-134 | indeterminate(ID)-domain 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG011145t4 |
Entrez Gene | 18609936 |
Publications ? help Back to Top | |||
---|---|---|---|
|