PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG010965t1 | ||||||||
Common Name | TCM_010965 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | GRAS | ||||||||
Protein Properties | Length: 616aa MW: 67186.7 Da PI: 5.9762 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 462.7 | 2.1e-141 | 246 | 605 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 lv++L++cAeav++++l+la+al++++ las+++ +m+++a+yf+eALa+r++r l p++ +++ s++l+++ f+e++P+lkf Thecc1EG010965t1 246 LVHALMACAEAVQQNNLNLAEALVKQVGFLASSQAGAMRKVATYFAEALARRIYR--------LYPQNPLDHSLSDVLHMH--FYETCPYLKF 328 689****************************************************........445555556688888885..********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 +h+taNqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa R +gpp++R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l Thecc1EG010965t1 329 AHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRGGGPPTFRLTGIGPPSHDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSL 421 ********************************************************************************************* PP GRAS 187 edleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +dl+ ++L+++p gEa+aVn+v++lh+ll++++++++ vL++vk+++P++v++veqea+hn++ Fl+rf+e+l+yys+lfdsle ++ Thecc1EG010965t1 422 ADLDASMLDLRPseGEAVAVNSVFELHKLLARPGAIDK----VLSVVKQMKPEIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGSV-- 508 ***********999****************99999988....************************************************7.. PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369 s++++++++++lg++i+nvvaceg +r+erhe+l++Wr+rl++aGF +v+l+++a kqa++ll+ ++ +dgy vee++g+l+lgW++rpL++ Thecc1EG010965t1 509 -SSQDKVMSEVYLGKQICNVVACEGVDRVERHEKLAHWRNRLGTAGFASVHLGSNAFKQASMLLALFAgGDGYGVEENNGCLMLGWHSRPLIA 600 .9999**************************************************************************************** PP GRAS 370 vSaWr 374 +SaW+ Thecc1EG010965t1 601 TSAWK 605 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12041 | 1.7E-36 | 46 | 112 | IPR021914 | Transcriptional factor DELLA, N-terminal |
SMART | SM01129 | 3.2E-38 | 46 | 119 | No hit | No description |
PROSITE profile | PS50985 | 67.67 | 220 | 584 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.3E-139 | 246 | 605 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0042176 | Biological Process | regulation of protein catabolic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MKRDHHHLQT NPDPSTVGSS SVCGGSTTGK AKMWQDEVAQ QDCGMDELLA VLGYKVKTSD 60 MAEVAQKLEQ LEEVMCNVQD DGISHLASET VHYNPSDLST WLESMLSELN PPSAFDPVVA 120 AGPAAAATLD DSFLGPAESS TLTTLDFDNN NQKHQKKGRQ LFEEASCSDY DLKAIPGKAI 180 YSQKTQTHDS SSSSTQNNVV KSEKRLKSTS GSHSDIYPPP ASSYGIPAES TRPVVLVDSQ 240 ENGIRLVHAL MACAEAVQQN NLNLAEALVK QVGFLASSQA GAMRKVATYF AEALARRIYR 300 LYPQNPLDHS LSDVLHMHFY ETCPYLKFAH FTANQAILEA FEGKKRVHVI DFSMNQGMQW 360 PALMQALALR GGGPPTFRLT GIGPPSHDNS DHLQEVGWKL AQLAETIHVE FEYRGFVANS 420 LADLDASMLD LRPSEGEAVA VNSVFELHKL LARPGAIDKV LSVVKQMKPE IVTIVEQEAN 480 HNGPVFLDRF TESLHYYSTL FDSLEGSVSS QDKVMSEVYL GKQICNVVAC EGVDRVERHE 540 KLAHWRNRLG TAGFASVHLG SNAFKQASML LALFAGGDGY GVEENNGCLM LGWHSRPLIA 600 TSAWKLANKT AATAH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-68 | 241 | 604 | 14 | 378 | Protein SCARECROW |
5b3h_A | 5e-68 | 241 | 604 | 13 | 377 | Protein SCARECROW |
5b3h_D | 5e-68 | 241 | 604 | 13 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00611 | ChIP-seq | Transfer from AT2G01570 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017971822.1 | 0.0 | PREDICTED: DELLA protein GAIP-B | ||||
Swissprot | Q8S4W7 | 0.0 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A0A061EFF9 | 0.0 | A0A061EFF9_THECC; GRAS family transcription factor family protein | ||||
STRING | EOY01029 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM837 | 28 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG010965t1 |
Entrez Gene | 18609825 |
Publications ? help Back to Top | |||
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