PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG010888t3

Common Name

TCM_010888

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WOX

Protein Properties

Length: 331aa MW: 37634.5 Da PI: 9.3907

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG010888t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.1	5.4e-22	81	140	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Leel+++ +r+psa++++++A++l +++ ++V++WFqN++a+e++ Thecc1EG010888t3 81 SRWNPTPEQLLALEELYRRgTRTPSAAQIQQIATRLrrfgKIEGKNVFYWFQNHKARERQ 140 7***************99************************************97 PP
2	Wus_type_Homeobox	111.4	4.7e-36	80	142	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ+ Leely++G+rtP++++iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ Thecc1EG010888t3 80 TSRWNPTPEQLLALEELYRRGTRTPSAAQIQQIATRLRRFGKIEGKNVFYWFQNHKARERQKR 142 68***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	7.4E-6	78	145	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.52E-13	80	145	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-19	81	140	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.1E-9	81	140	IPR009057	Homeodomain-like
CDD	cd00086	3.81E-6	82	142	No hit	No description
PROSITE profile	PS50071	11.321	86	141	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048513	Biological Process	animal organ development
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MYIYHRIFFA NSLLRCFFNM GYPHNTDLNL SHHSFNNAKP SPLIPKPNPA CPRNTTIISS 60 APSPCHAIRK AELSEHPLGT SRWNPTPEQL LALEELYRRG TRTPSAAQIQ QIATRLRRFG 120 KIEGKNVFYW FQNHKARERQ KRRRELETEQ ELKQCDTERF EKKEPGSATT GCEIEQTKNK 180 GPPSNFSKRS EELILTHGVA AAESGPNKWM QIQEKELQQT KSTAGRVSTW QAMELSCSPI 240 YLINSMTATS LATARASNTQ NLCSLKPHQE NITTLEDENR EDKTLELFPL GSNDRNGINI 300 SKKDTTQVPI TALNTTFTPN QYFEFLPLKN *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007045158.1	0.0	PREDICTED: WUSCHEL-related homeobox 6
Refseq	XP_017970244.1	0.0	PREDICTED: WUSCHEL-related homeobox 6
TrEMBL	A0A061E8K4	0.0	A0A061E8K4_THECC; WUSCHEL related homeobox 1, putative isoform 1
STRING	EOY00988	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	1e-37	WUSCHEL related homeobox 1

Link Out ? help Back to Top
Phytozome	Thecc1EG010888t3
Entrez Gene	18609788

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]