PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG008853t1 | ||||||||
Common Name | TCM_008853 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NF-YC | ||||||||
Protein Properties | Length: 234aa MW: 26374.7 Da PI: 11.4174 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 44.9 | 2.5e-14 | 97 | 181 | 15 | 98 |
NF-YC 15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 d + e+P r+k+i+k d+d+++i +ea l+s + +lf+ l+ rs a e+k++t+k + +av+r + dfl+d p Thecc1EG008853t1 97 DPIRPEFPTGRVKRIMKLDKDINKINSEALFLVSCSTDLFLRFLAERSAEVATEKKKKTVKLDHLRTAVKRHRpTSDFLLDSLPM 181 555679***************************************************************9975389*****9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.72E-17 | 67 | 168 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.1E-19 | 101 | 166 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.0E-18 | 102 | 165 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MRKSPMALMK KRALKSLVEV SAKITLPLEL PSLNEADKNW TRKLRRSNRK VKTSGSLAAM 60 RAAAKRRRQN GAGQNATRGW GKNKMFQRIP KKDEAIDPIR PEFPTGRVKR IMKLDKDINK 120 INSEALFLVS CSTDLFLRFL AERSAEVATE KKKKTVKLDH LRTAVKRHRP TSDFLLDSLP 180 MPAESTQSAA RTVTEREPSR PVADKPAAAG TRRIDHFFQH ITITCDYIQN GIS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017972017.1 | 7e-85 | PREDICTED: nuclear transcription factor Y subunit gamma | ||||
TrEMBL | A0A061E4H1 | 1e-170 | A0A061E4H1_THECC; Chromatin accessibility complex protein 1 | ||||
STRING | EOX99870 | 1e-171 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12860 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 7e-43 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG008853t1 |
Entrez Gene | 18609018 |
Publications ? help Back to Top | |||
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