PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG008477t1 | ||||||||
Common Name | TCM_008477 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 257aa MW: 29238.9 Da PI: 9.3615 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166 | 1.3e-51 | 14 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelvv+yL++kv + +l++ ++i+evd++k++Pw+Lp e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk+++ Thecc1EG008477t1 14 LPPGFRFHPTDEELVVQYLRRKVLAWPLPA-SIIPEVDVCKADPWELPGD---LEQERYFFSTREAKYPNGNRSNRATVSGYWKATGIDKQII 102 79****************************.89***************54...46799*********************************99 PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl Thecc1EG008477t1 103 TSrSNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138 8857778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-59 | 10 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.73 | 14 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-27 | 15 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLRRKVLAWP LPASIIPEVD VCKADPWELP 60 GDLEQERYFF STREAKYPNG NRSNRATVSG YWKATGIDKQ IITSRSNQVV GMKKTLVFYR 120 GKPPHGSRTD WIMHEYRLVS AETAACNAPH KKSQTQSHAV PMENWVLCRI FLKKRSSTTK 180 NDDDSMQSCN ENGARKVRTS RPVFYDFLTK DRTDLNLAPS CSSSGSSGIT EVSHNDTDDH 240 EESSSCNSFP YFRRKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-52 | 12 | 180 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-52 | 12 | 180 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-52 | 12 | 180 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-52 | 12 | 180 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-52 | 12 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-52 | 12 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-52 | 12 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-52 | 12 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-52 | 12 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-52 | 12 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-52 | 12 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-52 | 12 | 180 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-52 | 12 | 180 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-52 | 12 | 180 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00507 | DAP | Transfer from AT5G13180 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007043870.2 | 0.0 | PREDICTED: NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 1e-102 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A061E5W2 | 0.0 | A0A061E5W2_THECC; NAC domain protein, IPR003441 | ||||
STRING | EOX99701 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1806 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-104 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG008477t1 |
Entrez Gene | 18608896 |
Publications ? help Back to Top | |||
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