PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG008255t2 | ||||||||
Common Name | TCM_008255 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | VOZ | ||||||||
Protein Properties | Length: 418aa MW: 46771.6 Da PI: 5.0142 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 435.3 | 8.3e-134 | 206 | 418 | 1 | 213 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 pppsaf+gpkcalwdctrpaqgs+w+ dycssfhatlalne++pg+tp+lrp+gi+lkd+ll++al+ak+qgk+vgip+cegaat+kspwna+ Thecc1EG008255t2 206 PPPSAFMGPKCALWDCTRPAQGSDWYYDYCSSFHATLALNEDPPGMTPILRPGGISLKDNLLLDALRAKTQGKNVGIPQCEGAATMKSPWNAT 298 89******************************************************************************************* PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfdlsllege irewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgg+krsyymdpqps+++ewhl+eyei+ +da+alyrle Thecc1EG008255t2 299 ELFDLSLLEGEIIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEFGGQKRSYYMDPQPSGQYEWHLFEYEIYGCDAFALYRLE 391 ********************************************************************************************* PP VOZ 187 lklvdekksakgkvskdsladlqkklg 213 lkl++ekks+k kvskdsladlqkk+g Thecc1EG008255t2 392 LKLANEKKSPKVKVSKDSLADLQKKMG 418 **************************7 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MQNNSKNKCI SASHQLMVDN AKNRLNNLQE RFTDLQAARK EGRAGDVAVL EEQVYQSLRE 60 WKAELCAPSP ATSLLGGSLG SFSDDINRLL QLYEEEDDAS SPLKGPAVLK PETDVQSLNP 120 CNLPVVPEDY LVNHELQQHG LQGFDPCKVS TSALETTAVG NDINYQLDYH PFDLQQEFDH 180 GPLIGANGTE DCVKDASPNI LPNVSPPPSA FMGPKCALWD CTRPAQGSDW YYDYCSSFHA 240 TLALNEDPPG MTPILRPGGI SLKDNLLLDA LRAKTQGKNV GIPQCEGAAT MKSPWNATEL 300 FDLSLLEGEI IREWLFFDKP RRAFESGNRK QRSLPDYSGR GWHESRKQVM KEFGGQKRSY 360 YMDPQPSGQY EWHLFEYEIY GCDAFALYRL ELKLANEKKS PKVKVSKDSL ADLQKKMG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007043719.2 | 0.0 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-171 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A061E3L6 | 0.0 | A0A061E3L6_THECC; Vascular plant one zinc finger protein isoform 1 | ||||
STRING | EOX99553 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-163 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG008255t2 |
Entrez Gene | 18608793 |
Publications ? help Back to Top | |||
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