PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG008127t2 | ||||||||
Common Name | TCM_008127 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 222aa MW: 25627.3 Da PI: 7.0718 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.8 | 2.2e-09 | 25 | 77 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksLq 55 +++E++RR+++++ +++L +llP s ++ ls + +Av+YI+sLq Thecc1EG008127t2 25 RKIIEKNRRNHMKNLYSRLNSLLPRhTSkWILQEPLSLPDQIDEAVNYIQSLQ 77 589**********************5555344556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.95E-5 | 19 | 81 | No hit | No description |
PROSITE profile | PS50888 | 12.011 | 20 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-10 | 20 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-9 | 22 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-5 | 25 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-5 | 26 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MELQMVYSVH KEMERSPCSS AKIERKIIEK NRRNHMKNLY SRLNSLLPRH TSKWILQEPL 60 SLPDQIDEAV NYIQSLQTRL KESREKKESL MGRKRSHRCT TATAAEAAAV SKSPEISINE 120 TDSAMEVVLM TGQDCQFMFY EMIRILHEEG AQVLNANFSV LGNTIVHIVH AEIGAHIFTF 180 GAEKIKEKLN KFVHNSSSER QLQQELWDFE IHPETWDFPI M* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007043612.1 | 1e-166 | PREDICTED: uncharacterized protein LOC18608722 isoform X1 | ||||
TrEMBL | A0A061EAX8 | 1e-164 | A0A061EAX8_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2 | ||||
STRING | EOX99443 | 1e-165 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG008127t2 |
Entrez Gene | 18608722 |
Publications ? help Back to Top | |||
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