PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG008066t1
Common NameTCM_008066
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 485aa    MW: 53733.8 Da    PI: 5.7875
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG008066t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-19246296256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Thecc1EG008066t1 246 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 296
                       59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.55E-34245305No hitNo description
PROSITE profilePS5103222.932246303IPR001471AP2/ERF domain
SMARTSM003802.7E-40246309IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22246304IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-32246304IPR001471AP2/ERF domain
PfamPF008472.7E-12247296IPR001471AP2/ERF domain
PRINTSPR003671.1E-10247258IPR001471AP2/ERF domain
PRINTSPR003671.1E-10269285IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MGSRILKSAS RCLVLSMAAA KNSGKSKKGV VDETEKMTTS QDWEIDKGKD LDFGFERRQW  60
KPVFDEAFMS QRPLKKIRSP ERQDPVQSSV SLAHQSSSFS APSSVSTSSP SSLTLFPPSS  120
SSSSNATLPS SRLVFPFAFD ASQQPMHFPQ QYGNTPTLMP IFRPPQNQQH MISFSPQQQQ  180
HGFVYPPFFA GESTLPPQQQ QQQLLQYWSD ALNLSPRGRM MMMSRLGQDG RQLFRPPVQP  240
INTTKLYRGV RQRHWGKWVA EIRLPRNRTR LWLGTFDTAE DAALAYDREA FKLRGENARL  300
NFPELFLNKD KDTSTAPSST VSSPQTPRES SKPNQNQNLP QQEQEGLNLQ SAKIEMMPPP  360
AQPQGDNPDS DSGLGSSEAT ASDEVQMTAE GSGAGEGVSG SQELVWGDMA EAWFNAIPAG  420
WGPGSPVWDD LDTTNNLLIP SNLPFANQNQ QDLSDSDIQK QQDSCASSSS TSCPMKPFFW  480
KDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-21245303160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5323101e-122EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972100.10.0PREDICTED: ethylene-responsive transcription factor ERF053
TrEMBLA0A061E4170.0A0A061E417_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOX993820.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-50ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]