PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007904t1
Common NameTCM_007904
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 405aa    MW: 45652.6 Da    PI: 8.4792
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007904t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-1768115148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT++Ed++l ++++ +G+g+W+t ++  g+ R++k+c++rw +yl
  Thecc1EG007904t1  68 KGPWTPDEDLKLTNYIQTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 115
                       79********************************************97 PP
2Myb_DNA-binding54.33.2e-17121165147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  Thecc1EG007904t1 121 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 165
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-2559118IPR009057Homeodomain-like
PROSITE profilePS5129416.79663115IPR017930Myb domain
SuperFamilySSF466892.03E-3065162IPR009057Homeodomain-like
SMARTSM007173.8E-1367117IPR001005SANT/Myb domain
PfamPF002492.2E-1568115IPR001005SANT/Myb domain
CDDcd001675.45E-1170115No hitNo description
PROSITE profilePS5129425.255116170IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-26119170IPR009057Homeodomain-like
SMARTSM007171.8E-16120168IPR001005SANT/Myb domain
PfamPF002491.4E-15121165IPR001005SANT/Myb domain
CDDcd001673.03E-12123166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MRIYIQEKKK REGYIAFLKL CRNERASNYP SLTPSRKLHC HQLHLCISLF QGKSMGRTPC  60
CDKNGLKKGP WTPDEDLKLT NYIQTHGPGN WRTLPKNAGL QRCGKSCRLR WTNYLRPDIK  120
RGRFSFEEEE TIIQLHSILG NKWSAIAARL PGRTDNEIKN YWNTHIRKRL LRNGIDPVTH  180
APRLDFLDLS SILSSTLCSQ SLLNVSSMLG TQAFLNPELL RLANTLLSLK QENPEILLQY  240
LQQNQLCDSQ QNLVPSLQPS QLQIPIQNAS TCTTSNVPCT STLSQMQANG EGFCSNMTNF  300
SYPNSQENLT SSTLNNAFVS QPIYVQCRPN STVPLLSENS NFQSLDGSQN FNFDSVRSTP  360
ISSPTPLNSS STFINSSSTD DERESFSSLL KFEIPESLDI NDFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-29661702105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-29661702105C-Myb DNA-Binding Domain
1msf_C3e-29661702105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021276916.10.0transcription factor MYB41-like
SwissprotQ9LDR83e-98MY102_ARATH; Transcription factor MYB102
TrEMBLA0A061E4L10.0A0A061E4L1_THECC; MYB-like 102, putative
STRINGEOX992810.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.14e-90MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  5. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]