PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007214t1

Common Name

TCM_007214

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 268aa MW: 28627.5 Da PI: 7.4724

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007214t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H +H Thecc1EG007214t1 93 YKCSVCNKAFPSYQALGGHKASH 115 9***********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.1E-14	93	117	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.242	93	120	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.15E-9	93	115	No hit	No description
SMART	SM00355	0.0057	93	115	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	95	115	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.15E-9	143	170	No hit	No description
Pfam	PF13912	1.9E-13	147	172	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.328	148	170	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.18	148	170	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	150	170	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MALEALNSPT TATTFSNKYE DIDNNYLETW KKGKRSKRPR SESPTTEEEY LALCLIMLAR 60 GSTNDDDHPR QLSSSSSPAA APAPAPPALK LSYKCSVCNK AFPSYQALGG HKASHRKPST 120 DAATTNGDNP SATSTTATSA TSGSGRAHEC SICHKTFPTG QALGGHKRCH YEGGNNNNNN 180 NNNKCGSVSV SVSGVTLSDG GALSQSHRVD FDFDLNLPAL PEFCGENKDG RFSQIYAEQE 240 VESPLPTKKP RFLIAKEEKP ESSLAQN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007042625.2	0.0	PREDICTED: zinc finger protein ZAT10
TrEMBL	A0A061E282	0.0	A0A061E282_THECC; Zinc-finger DNA binding protein, putative
STRING	EOX98456	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1211	28	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	3e-50	salt tolerance zinc finger

Link Out ? help Back to Top
Phytozome	Thecc1EG007214t1
Entrez Gene	18608074

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]