PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG007039t1 | ||||||||
Common Name | TCM_007039 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29938 Da PI: 9.1686 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.2 | 1.5e-18 | 128 | 217 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v+ +l lp +f+++h + e+k++tl de+g+++ k+ +k++ l++GW++F +++L +gD +vF+l+ +ef + Thecc1EG007039t1 128 FVKPMLQSHVTGGFWLGLPVQFCKKHLPD--EDKMITLVDEKGEEFPTKYLAEKTG----LSGGWRGFSVDHNLVDGDALVFQLVTPTEF--K 212 89************************534..6679***************555555....***********************9876666..8 PP EEEE- CS B3 94 vkvfr 98 v ++r Thecc1EG007039t1 213 VYIIR 217 88887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-23 | 120 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-25 | 121 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.86E-29 | 126 | 217 | No hit | No description |
SMART | SM01019 | 2.0E-23 | 128 | 219 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.633 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-17 | 128 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVAPKATYEQ MRKRRLEENK KRMEELNLKN LSQALKNTSP KPSPMKQMKP RTPRQRVDLT 60 AVRRSSRVAD KPKPNYKDIP LEPLERPRRS HSRRNLWDRV YASDEERAYA IERAEQLEST 120 LESDYPSFVK PMLQSHVTGG FWLGLPVQFC KKHLPDEDKM ITLVDEKGEE FPTKYLAEKT 180 GLSGGWRGFS VDHNLVDGDA LVFQLVTPTE FKVYIIRAYE SEDNEDGEPG EDDKEPEPDV 240 KPDVQVLDRS AKRIRARK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007042396.2 | 0.0 | PREDICTED: B3 domain-containing protein At3g19184 isoform X2 | ||||
Swissprot | Q1G3M3 | 2e-85 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A061E0U4 | 0.0 | A0A061E0U4_THECC; AP2/B3-like transcriptional factor family protein, putative | ||||
STRING | EOX98227 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-81 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG007039t1 |
Entrez Gene | 18607918 |
Publications ? help Back to Top | |||
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