PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007038t1
Common NameTCM_007038
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 466aa    MW: 52907.9 Da    PI: 7.9016
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007038t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.2e-1988177299
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       +k ++ps+v+   +l lpk+f+ +h  k  e+++++lede+g++++ k+ ++k++    l++GW++F  a++L egD++vF+l++ s+  l+v
  Thecc1EG007038t1  88 IKYMLPSHVTGGFWLGLPKDFCLKHLPK--EDRMIVLEDEEGKEFQAKYLVEKTG----LSGGWRGFSIAHKLLEGDVCVFHLIKPSK--LKV 172
                       58899********************533..5679***************777776....***********************998555..599 PP

                       EEE-S CS
                B3  95 kvfrk 99 
                        ++r+
  Thecc1EG007038t1 173 YIVRR 177
                       98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.04E-2480178IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-2180178IPR015300DNA-binding pseudobarrel domain
CDDcd100178.78E-2685176No hitNo description
SMARTSM010198.4E-2287178IPR003340B3 DNA binding domain
PROSITE profilePS5086313.01487178IPR003340B3 DNA binding domain
PfamPF023628.2E-1788177IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MAVSPKQRIS PVKVKRRRPP KYRFFRNKLS GLDKMTPNQF VSLGKEKAQR HKRKRVDDMY  60
ENDQVKSAVT ERAVEVQTNL SSEFPSLIKY MLPSHVTGGF WLGLPKDFCL KHLPKEDRMI  120
VLEDEEGKEF QAKYLVEKTG LSGGWRGFSI AHKLLEGDVC VFHLIKPSKL KVYIVRREGS  180
DEMNVALGLL KLESSTQPMD LVKEPKICEG TRDESLGNYG VEENRICVET TGKPLEVLPL  240
GIYPKTIHNN DPTLSSTSLG PTPYHSENDS EDLGSEVLDG IRLSESIVDF KEVKSIENFK  300
ILANGLIINS ELAKYVQMKY YELCCSQKSF LHDHLLEGLN YKLVAGVIAE TVNIADAIRA  360
AKLTTSHHNF LTWDQTLKSF EGLGMKVGML RSRLDRLMNL SLKAKRHQEA RLEQVHAKEE  420
ERKLEAKLLE VTEALNRLDR EIGSLEEENA DRLEILFQEK ASAPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021296244.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A061E1N70.0A0A061E1N7_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGEOX982260.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16718911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-41B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]