PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007036t1

Common Name

TCM_007036

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Protein Properties

Length: 409aa MW: 46344.1 Da PI: 7.4139

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007036t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.8	1.7e-17	45	131	2	96
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 k++++s+v +l lp +f++ h+ k + t++ledesg++++ ++i ++ + l++GWk F ++L egD++vF+l+++s+f +v Thecc1EG007036t1 45 MKTMVRSNVRHGFWLHLPMPFCKLHMPK--HDATVILEDESGEEYKTTYIAER----TALSAGWKAFSAGHKLVEGDVLVFHLVSSSKF--KV 129 699*****************999744..6679***********4444....45**********************998888..55 PP EE CS B3 95 kv 96 + Thecc1EG007036t1 130 YI 131 55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.9E-20	41	133	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-22	41	132	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.43E-23	42	133	No hit	No description
SMART	SM01019	1.0E-17	44	138	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.52	44	135	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-14	45	131	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MGTKIEEPQI SETSLDPDNV NRQPSVMERV EELQANLAAG FPSCMKTMVR SNVRHGFWLH 60 LPMPFCKLHM PKHDATVILE DESGEEYKTT YIAERTALSA GWKAFSAGHK LVEGDVLVFH 120 LVSSSKFKVY IVKAFKSNKL DGRFGSLNVN VDAKPIRSVR MKRRKRTSKR AKCLELLPLN 180 HAQDNVDNNS LMVLDTKNER LVDQSDNDSK DLSSGLFDGI RSLASIIDFN EVKSIDSFVI 240 TVNGSRIDSE LSEYHKTKYY ELCCSQNSFL HDHLLKSISS KLAAEIITQT VNIAEAVKGC 300 KLSSFQADYS LWDKTLKGFE LLGMNVGFLR ARLNRLKTLA LELQEAVESE RHRVSLEQDH 360 MKEEKKSLEM KLVKLKEAMH RLDAEIENLK ANAEKHELIF QEEVNAAW*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MGTKIEEPQI SETSLDPDNV NRQPSVMERV EELQANLAAG FPSCMKTMVR SNVRHGFWLH  60
LPMPFCKLHM PKHDATVILE DESGEEYKTT YIAERTALSA GWKAFSAGHK LVEGDVLVFH  120
LVSSSKFKVY IVKAFKSNKL DGRFGSLNVN VDAKPIRSVR MKRRKRTSKR AKCLELLPLN  180
HAQDNVDNNS LMVLDTKNER LVDQSDNDSK DLSSGLFDGI RSLASIIDFN EVKSIDSFVI  240
TVNGSRIDSE LSEYHKTKYY ELCCSQNSFL HDHLLKSISS KLAAEIITQT VNIAEAVKGC  300
KLSSFQADYS LWDKTLKGFE LLGMNVGFLR ARLNRLKTLA LELQEAVESE RHRVSLEQDH  360
MKEEKKSLEM KLVKLKEAMH RLDAEIENLK ANAEKHELIF QEEVNAAW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970038.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100
Refseq	XP_017970039.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100
TrEMBL	A0A061DZV9	0.0	A0A061DZV9_THECC; AP2/B3-like transcriptional factor family protein, putative isoform 1
STRING	EOX98224	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16717	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	9e-35	B3 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG007036t1
Entrez Gene	18607916

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]