PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007035t1
Common NameTCM_007035
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 422aa    MW: 47319.8 Da    PI: 6.8459
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007035t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.5e-19125214198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffk+++ps+v    ++ lpk+f++ h  +   ++t++l de g++++ ++    ++++  l++GW++F +++gL +gD +vF+l++ s+f  +
  Thecc1EG007035t1 125 FFKIMIPSMVCGCFWMALPKEFCQLHL-P-SHNTTVVLVDEGGKEYKTNF--LVQRRA--LSGGWRKFSQEHGLLVGDALVFHLIRPSKF--K 209
                       99*********************8884.3.35579***************..555544..9************************98999..8 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v ++r
  Thecc1EG007035t1 210 VYILR 214
                       88776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-21119216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-24120217IPR015300DNA-binding pseudobarrel domain
CDDcd100174.42E-28123214No hitNo description
SMARTSM010199.8E-22125216IPR003340B3 DNA binding domain
PfamPF023621.8E-16125214IPR003340B3 DNA binding domain
PROSITE profilePS5086313.676125216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MMMHMKMKVK VEEEEPTQMQ QEPLVDEDEE DHLPISQLFQ LLKQRQHQSL LSSSSSSSSS  60
SMSMEIHDYP QKAARKRPRA KHSNDHVIKA LPAVKVKAEE AWANSSVNKR AEEVQANLPA  120
EFPSFFKIMI PSMVCGCFWM ALPKEFCQLH LPSHNTTVVL VDEGGKEYKT NFLVQRRALS  180
GGWRKFSQEH GLLVGDALVF HLIRPSKFKV YILRVNGLGE VDAALGLLRL ETSAKQTCIN  240
HAGKNNAEPF AQDINQYEVH RNSLSYPSAE ENQSDNGSFG IGSSEVEGIR SSPEANAEFE  300
QSRDAIGASK ISPPQADFVA WDNTLAGFEL LGMNVGVLRN RASRLLDPAF ESKTQVKSRR  360
FKEAEPERAY VEQEARSLKL QLLEKREEMG RLDADIEALK VNARRHKLMF EAVVNAPCMG  420
I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379ARKRPRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042391.20.0PREDICTED: B3 domain-containing protein Os01g0234100 isoform X4
TrEMBLA0A061E0T90.0A0A061E0T9_THECC; Uncharacterized protein isoform 1
STRINGEOX982220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2226845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-33B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]