PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006967t1

Common Name

TCM_006967

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Protein Properties

Length: 445aa MW: 51496.7 Da PI: 7.3455

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006967t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.2	2.3e-16	21	112	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk+ +p +++ l++p+kf+ ++g++ s t+ ++gr+W++ l +k ++r++l +GW eF + n ++ g f+vF+++++s+f + Thecc1EG006967t1 21 FFKIILPRTIAEKN-LTIPNKFVGKFGHE--LSGVATFVLPNGRKWKIGL--TKADDRIWLDDGWHEFIEYNSIRYGYFLVFRYEKDSTF--H 106 78888888888887.******999965..77799**********..******************************998999..9 PP EEEE-S CS B3 94 vkvfrk 99 v +f++ Thecc1EG006967t1 107 VIIFDN 112 999987 PP
2	B3	46.1	8.6e-15	355	440	10	98
HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ s+ + +p f +e+ +g++ +++ed++gr+W +++ +++++ ++l+kG +F ++n+LkegD+++F+l +++ + ++++fr Thecc1EG006967t1 355 NFDSSTMHVPAGFDTEYlSGVT-D--HIRVEDSDGREWFIEF--KRHRNFgILLRKGCYRFWRDNNLKEGDVCIFELRDKKAAVHKISIFR 440 6677889999999999976664.3..5*************..9999989***********************987688877777777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-24	18	115	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-23	18	115	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.62	20	113	IPR003340	B3 DNA binding domain
CDD	cd10017	2.45E-16	20	111	No hit	No description
SMART	SM01019	4.0E-15	21	113	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.1E-13	21	112	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.6E-17	340	442	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.47E-18	340	441	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.91E-12	345	440	No hit	No description
PROSITE profile	PS50863	11.448	346	442	IPR003340	B3 DNA binding domain
SMART	SM01019	7.8E-12	347	442	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.0E-13	352	441	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MAHRTRKRPR SNHVVDESLH FFKIILPRTI AEKNLTIPNK FVGKFGHELS GVATFVLPNG 60 RKWKIGLTKA DDRIWLDDGW HEFIEYNSIR YGYFLVFRYE KDSTFHVIIF DNSACEVDYP 120 SNDEELTDGE SEKHSIHQDS ETEEDDSPEV LGVKAPSLNE RANREAINGN QDASSQQHLV 180 RKPQVDAASH KNSEVKQDKV TRVKRCKTEE VEFDNLNESR QINSNIKELR RSHRLLPSKS 240 HLMNQNATGI HDQDLSVQLQ DLKQQFDGKK LKITIQRANL QSLEVMHKGN EANKETESGK 300 QDQHGSIQDE EIEIYVSRMF FGISSTSRDR ERAIRAVEVI KPKNPCFMII LRRGNFDSST 360 MHVPAGFDTE YLSGVTDHIR VEDSDGREWF IEFKRHRNFG ILLRKGCYRF WRDNNLKEGD 420 VCIFELRDKK AAVHKISIFR ADSN*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MAHRTRKRPR SNHVVDESLH FFKIILPRTI AEKNLTIPNK FVGKFGHELS GVATFVLPNG  60
RKWKIGLTKA DDRIWLDDGW HEFIEYNSIR YGYFLVFRYE KDSTFHVIIF DNSACEVDYP  120
SNDEELTDGE SEKHSIHQDS ETEEDDSPEV LGVKAPSLNE RANREAINGN QDASSQQHLV  180
RKPQVDAASH KNSEVKQDKV TRVKRCKTEE VEFDNLNESR QINSNIKELR RSHRLLPSKS  240
HLMNQNATGI HDQDLSVQLQ DLKQQFDGKK LKITIQRANL QSLEVMHKGN EANKETESGK  300
QDQHGSIQDE EIEIYVSRMF FGISSTSRDR ERAIRAVEVI KPKNPCFMII LRRGNFDSST  360
MHVPAGFDTE YLSGVTDHIR VEDSDGREWF IEFKRHRNFG ILLRKGCYRF WRDNNLKEGD  420
VCIFELRDKK AAVHKISIFR ADSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	2e-17	326	442	28	143	B3 domain-containing transcription factor VRN1
4i1k_B	2e-17	326	442	28	143	B3 domain-containing transcription factor VRN1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007042301.2	0.0	PREDICTED: B3 domain-containing protein REM21
TrEMBL	A0A061E0I2	0.0	A0A061E0I2_THECC; Uncharacterized protein
STRING	EOX98132	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01580.1	6e-29	B3 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG006967t1
Entrez Gene	18607854

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]