PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006953t1 | ||||||||
Common Name | TCM_006953 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 197aa MW: 22530 Da PI: 10.6472 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44 | 4.1e-14 | 67 | 166 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr 87 k+lt+ dv+ rl++p k ++++ g+ +++ d++g+sW + l+ r++ ++ vl++GW+ +v+a+gLk++D v++++++r Thecc1EG006953t1 67 KELTKTDVGV--RLSFPMKSLKAFefprGK---DKVEFEAIDSTGKSWIFGLSRRNSHRHshpkPVLSSGWRAYVQAKGLKQNDRVIIHYEER 154 5666666665..599******999887433...346788889**********8766666588899**************************88 PP .SEE..EEEEE- CS B3 88 .sefelvvkvfr 98 + + ++k++ Thecc1EG006953t1 155 dKAMKTRFKIRA 166 788888888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-16 | 56 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-13 | 60 | 165 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.00E-15 | 66 | 165 | No hit | No description |
Pfam | PF02362 | 1.2E-10 | 69 | 166 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.107 | 103 | 168 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MESAIHVAFN VPEKKKNLHV PNLQDSGLFK DRTISKNFAS ISTNPLFYTQ LLSLDSRCQS 60 ATMLVKKELT KTDVGVRLSF PMKSLKAFEF PRGKDKVEFE AIDSTGKSWI FGLSRRNSHR 120 HSHPKPVLSS GWRAYVQAKG LKQNDRVIIH YEERDKAMKT RFKIRAQRKS PKTLKLFGKE 180 VEIWDDLENL QPEVAA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021286333.1 | 9e-88 | uncharacterized protein LOC110418043 | ||||
TrEMBL | A0A061DZC4 | 1e-143 | A0A061DZC4_THECC; Uncharacterized protein | ||||
STRING | EOX98119 | 1e-144 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22245 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 2e-06 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006953t1 |
Entrez Gene | 18607841 |
Publications ? help Back to Top | |||
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